Detailed information of Actinostola_11562 in Actinostola sp. Cb2023 Gene info
Gene IDAnnotationScaffoldStartEndStrand
Actinostola_11562DNA LIGASE 1/3 FAMILY MEMBERscaffold19_size1160681360160386557+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01068DNA_ligase_A_MATP dependent DNA ligase domainDomainInterproscan
PF04437RINT1_TIP1RINT-1/TIP-1 familyRepeatInterproscan
PF04675DNA_ligase_A_NDNA ligase N terminusFamilyInterproscan
PF04679DNA_ligase_A_CATP dependent DNA ligase C terminal region FamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000977FamilyDNA ligase, ATP-dependentInterproscan
IPR007528FamilyRINT-1/Tip20Interproscan
IPR012308DomainDNA ligase, ATP-dependent, N-terminalInterproscan
IPR012309DomainDNA ligase, ATP-dependent, C-terminalInterproscan
IPR012310DomainDNA ligase, ATP-dependent, centralInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR016059Conserved_siteDNA ligase, ATP-dependent, conserved siteInterproscan
IPR036599Homologous_superfamilyDNA ligase, ATP-dependent, N-terminal domain superfamilyInterproscan
IPR042042Homologous_superfamilyProtein transport protein Tip20, domain BInterproscan
IPR042044Homologous_superfamilyEXOC6/PINT-1/Sec15/Tip20, C-terminal, domain 2Interproscan
IPR050191FamilyATP-dependent DNA ligaseInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45674DNA LIGASE 1/3 FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003909Molecular FunctionDNA ligase activityInterproscan
GO:0003910Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0006266Biological ProcessDNA ligationInterproscan
GO:0006273Biological Processlagging strand elongationInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006890Biological Processretrograde vesicle-mediated transport, Golgi to endoplasmic reticulumInterproscan
GO:0070939Cellular ComponentDsl1/NZR complexInterproscan
GO:0071897Biological ProcessDNA biosynthetic processInterproscan
GO:1903461Biological ProcessOkazaki fragment processing involved in mitotic DNA replicationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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