Gene detail

Detailed information of Actinostola_11214 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_11214	COLLAGEN ALPHA	scaffold184_size508322	112640	150063	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_11214

AGTGCAAACTTTGTGAGGGTTTTCGGTCTAAAGGATCTACCTGGGAATATGACCAAAGCCTCTGGTCTTTGTACATCTAGGCCACGCCCAGATGGTGGTTATGAAGAAGACATCGCCTACAGAATGGAAAACTCTCAAAGTGCCATGAGTCTACCAACGCGCCTGCTCTTCCCAAGAAAATTCCCATCAAACTATGTGATAATGACAACCGTGAAAACAGAGATGGATAATGTAGGAAGTCTTTTCTCTATCTTTAATGCCGACAGGCAGCTATCGCTTGCATTTTCTGTCAATCCTATTGGCTTAAAGTATCGAAAACCTGATGGCAGCATAGGGAAGGTAACATTTGGAGCAAGCCTTGCAGACGGACAATGGCATCGAATTGCACTAAGTATTGGAGAAAGGGTAATCGTAATGGTTGTCGATTGTGAGGAACAAGTACCCAGTGAATCAGTAGTCGACAAACCATCTGATTTTCCAGTGTCCATTAATACATCAGGGATCACAGTACTTGGTAGTGATTTCAAAGACGGCTCCTACTTCAGGGGCGTTCTTCATGATCTGCGAATTGTACCAGACTCCAGCCAGATGGGAGTGTATTGTTTACATTATGTTCCTGATTGCGATCGTCCAACACCCAGATATGTAACGAGAAGAACACGACAAGCACCTAACATAGCTGACAGAAAAGGCGTTATCATTGGAAATACCAAATACATTAAAGGAGATCCTGGATCACCAGGCGGTCCCGGGCGTTCAGGAGATGCAGGCCCATCAGGACCTAAGGGCTTCTCAGGAGAGAAAGGCAACAGAGGACCACCAGGCTCAACCGGCCCCTCTGGACCAGCTGGTCCAACTGGCAAAGAGGGACCCCGAGGACGTACAATCACTGTTGTATGGCCTCCAGGTCAAACAAAGGGACCAGGCGCTCGTCCTCCACCAGCCTCACAAATGGTCGTCCCTCCTCCAGTGTCTGGTGACCAGGGCCCACGAGGACCTCGTGGTCAGAGAGGAGTTTCAGACCAAGCCAACATTGAAGCTGTCCTACTCCTGAAAACCCGCGCACCCAAAACAGTGGGAGATGTAAGGAAACTGATGGGGTTTCTGAATTATTATCGACGATACATCAGGAACTTCTCACGCATCGCACGACCGATCTACGACCTGATGTCTGTGCCACCATCCAGCTCGTGTTCACCACAGAAAGGGGTGCGTAAACAGAACCCCAAGACAGGACAGCCCTCCTCGAATACTTCAGTTACCTGGACGACATCTCACCAGTCAGCCCTAGAGATATTGATAGGATATTTGGTAAGTCCACCAGTTATGGCCTACCCCAATTACACCGACCCTTTCATCTTGACAACTGACGCGTCTGAGGATGGACTCGGTGCAGTGTTGTACCAACGTCAAAATGGTATTACACGTGTTATAGCTTACGGTTCAAGATCACTCTCTCCGGCTGAACGAAACTACCACCTTCATTCCGGAAAGTTGGAGTTCTTGGCGCTCAAATGGGCGATTTGTGAACAGTTCAGAGACTACCTCTACTATGCTCCAAGCTTCACTGTGTACACTGACAATAACCCCCTTACGTACGTGTTGTCTTCTGCGAAGTTGAATGCCAGTGGTTTACGCTGGGTAGGAGAACTAGCCGATTTTAACTTTTGTATTAACTATAGACCAGGAAAGAGCAACAATGATGCAGATATGTTGTCTAGAGCCCCTTTAGACATTTCGTCGTACATGGAAAGCTGCACTGAAGAAGTAACTCAGGACGTTCTGAAGACAGTCGTCACTGCTATACAGTTACAAGAGGACGGAAGAACAACCTGGATATCTGCAATAACCACTGATCATTCACTTCTTAACCTTAATATCACAGAAATAGAAGCTAACACTACAAACCTCACTGAAATTACTACTGTTGAAATCCGCCGAGCACAAAGAGATGACAAGGCCATCGGAAAAGTTGTCAGCTACCTATTGTCTGGTAAACGCCCAACTGCAAAGGAAGTTCTTCAGGAGATGCCGGAAACACGGGCGCTTCTTCACGAGTGGCGCAAGTTAAGTTTAGATGATGATGGAGTGTTACTACGGAGCCCACGTCGTCAGGTGGTACTTCCCGATAAGCTGCGTAGACTGGTCTACCAAGAATTACATGAAAAGATGGGACACCTCGGCAGCGAGAGAGTCGTGAGCTTAGCCAGAGATCGTTTTTATTGGCCGCACATGCAACGTGATATTGAACATTATGTGAAGAATGTCTGCCGATGTGTCAAACAAAGACCGCCTGCGCGCAAGACCAAGGCACCTCTGCAACCTATTGTTACAACTTCACCCTTCGAGCTGGTCTCGCTAGACTTTCTCCATCTTGAAAAGAGCAGTGGGGGGTATGAATATATACTCGTTATCGTCGACCACTTTACCCGCTTCGCGCAAGCATATGCTACACGGAACAAGTCTGCACGAACAGTGGCTGACAAGCTATACAACGATTTTATTCTGCGTTTCGGGTTACCATCTCGAATACACCATGACCAGGGTGGCGAGTTCGAGAACCGTCTATTCCAGAGGCTTGAGGAATTGTGTGGCATATCGCATTCGAGAACGACACCCTATCACCCACAGGGGAATGGACAGGTAGAGCGATTTAACCGTACCCTGCTGGGCATGCTACGTACTCTTCCCGAGAAGGAGAAATATCGATGGAAAGACCACCTCAACAAAGTTGTGCACGCTTACAACTGTACTCGCCACGAGTCCACAGGATACTCGCCGTTCTTTCTACTATTTGGACGAGATCCCCGCCTTCCAATTGATCTGATCTTTGGTTTACGTACTCCTAACGCAAGCAGCAGTTATCCTCAATATGTATCCACGTGGAAGAACGCCATGAAGGAAGCGTATTCCCTCGCACAACGGAGCGCAGTCTCAGGAGCAGCGAAGGGGAAGCGATCGTACGACACACAAGGTCTACCGGGATCTCCAGGAGAGAAGGGTACACATGGTGACCCAGGTCTATTGGGACCAGCAGGGCCGTTGGGAATTAGGGGATCAAGAGGACTTGCTGGAAAAAGAGGTCCCCCTGGACCTGATGGTCTGAGAGGGCCATCAGGAGCAAATGGACCAAAGGGTGATAGAGGTTTGGATGGCATTCCTGGCCTTCCTGGCCACAAAGGACCACGAGGTATACAAGGACCTCGAGGAGATATCGGAGATAAGGGCGAACCTGGAGCAAGAGGAGAGAGAGGACAACCAGGAACGACTGGAATATCAGGAGAGAGAGGAACCCAAGGCGAGGCAGGCCCAAAAGGACCACCTGGACCACGTGGTCTTCTGGGATCTCCTGGCGAAAGAGGACCATCAGGACCCACCGGTCCTCCAGGACCAATTGGTGCACCTGGTATTCAAGGCATCCAAGGCATGAGAGGACCACCGGGTCCAACAGGCATTCCTGGCCCTGCTGGACCAAGTGGACCAAAAGGTGATCCTGGTAAAATTGGTATGCCTGGTTTCCCTGGCGCTGATGGTCTTCCAGGTTACCCTGGAATCGAAGGACCACCAGGACCAAAAGGCAACAGAGGACCAATTGGACCAAGAGGACCACAGGGATACCAAGGTCTTCCAGGACCAAAGGGCAACCAAGGAAGGCGTGGAGCATCTGGCGCTAAAGGAGATGAGGGAACAGCAGGATTCCCTGGAGAGAAGGGAGACGATGGACCAAGAGGAGAAGACGGAACATCTGGTGGACCAGGCCTTCCTGGCCCTGAAGGTAGAGAAGGACCCAAGGGTCGCACTGGATTACCTGGACCACCTGGTGTATCTGGACCATCTGGACCTAAGGGCGAGCAAGGAGTAGCTGGTATGACTGGTTATCCAGGACAGGCGGGAGCTAAGGGTGACCAAGGCCCTCCTGGTACAAGAGGGCGTGACGGTTCCAAAGGATCAAGGGGAGAATCCGGAAAGTTAGGACCACGGGGCCCCCGCGGAAGACGTGGTCCACGCGGTGAAAGGGGAAGTGCCGGTACTCCTGGTGCATCTGGGAACAAGGGTGCCGCAGGAGAGCCTGGCGTTCCTGGAGACCGTGGTCCACTGGGACCACCCGGTCCACAAGGAGATCGTGGTGGACCCGGTGCCGCGGGAATGATGGGTCTTCCTGGACGAGCTGGTTTACCTGGATTTCCTGGACCTCGTGGAGAGACGGGATCCCAAGGTAAACCTGGATCAGCTGGTAACCCGGGAATGCCAGGACCACGTGGTCCCCCTGGTGACAAAGGACCTCAAGGACCAAAAGGAGATCTTGGCCGTGCTGGTGAACCTGGTGAACCTGGACTAGCAGGAGATTCTGGCAAAGATGGCAAAAAGGGTGAGCCTGGGAAAGCAGGTGTTCCTGGAAAAGACGGTTTATCGGGACCTCTCGGTAAAGCTGGTCCCAAAGGAGCCACAGGATTGCCCGGAGTAATGGGTCCGAAAGGTGTGGAGGGACCCAACGGAGCATCTGGCCAAGCAGGACCAATAGGACCTCGTGGTGTGCCTGGATTACCTGGACCCCAGGGACCCAACGGAAGACCTGGTCCTACTGGAGCTAGTGGAAGCACTGGAGAGAAGGGTAACAAGGGTGAAGAAGGCCCGCGAGGCGATCCAGGTCCAGCAGGCAAACCAGGCGGATCGGGAAAACCAGGACCTGAAGGACCACAAGGACCTTCAGGAGATGATGGTGAGAAGGGTGCACAAGGATCCGGTGGGCCATCGGGCAAAAAAGGAGATCGAGGACCTAATGGGCCTCCTGGGCCACCTGGTCCAGTAGGAAATCCTGGCAAGTCTGGACCACAGGGACCGCCTGGAGAACAAGGCGTCCACGGACCTGTTGGACCACGTGGTGGCAAGGGACCTGATGGAGGACGAGGTTCCCCTGGTCCCCAAGGACAACCTGGTGTACCTGGAGTTCCTGGTCCGCGTGGACAGAAAGGAGAACGCGGTCCATCTGGGCCAGCGGGCGCTTCTGGGCCATCTGGAGCGCGAGGAGCCAGGGGACCAGCAGGACCAAAGGGAGATCTAGGAGAAATTGGTGATCCTGGTGCTAATGGAAGAGTTGGAGATAAGGGTGACCGAGGACCAAAGGGAGACTCTGGAGCTTCTGGAATAGCTGGAACACCCGGTCGATCAGGAGAGTCAGGACAGAAGGGAGCTCGTGGAGATCCTGGTCCACAGGGACCACAAGGACCACGAGGACCTTCAGGACCATCTGGAGATACAGGACCAATTGGTCAACCTGGACCTTCTGGACCTGTAGGTCCTCAGGGCCCACAGGGAGCAAAGGGTAACCGAGGACAAGACGGTGAAGATGGCGGACCTGGCAAGCCTGGACCTCGTGGTGCTCCAGGTCGTCGTGGAGATGATGGTTCCCCAGGCCCTGCAGGCAATGCAGGTGAGGCTGGTCTAAAGGGATACCCCGGCAGAGATGGAGAACACGGTGATAAGGGCGACACTGGACCACCTGGACCACAAGGACCTTTGGGATCCCCCGGAGCACAGGGACCTCGAGGATCACGTGGGTTACCTGGAGAGCAAGGAGCCCCTGGTGGTTCTGGTGATGTAGGACCTCAGGGTATTACGGGTCCTCCTGGAGCATCTGGCCCAGCCGGCGACAAAGGAGACAAGGGTGATAGGGGTGCATCAGGCGAGAAGGGAGACAAGGGCTGGTCTGGATTTACTGGTCCAGTTGGACCCTCTGGAAAACAGGGAGAGAAGGGAGATCAAGGTTCCTCAGGTCTAATTGGTTATTCAGGACCCAAGGGAGACAAGGGTGCAGACGGACCAGACGGACCTCTCGGACCAGATGGGCCTGCTGGACCAAGAGGCCACAAAGGAGACAGAGGACCTATAGGAACAAGGGGAGATACCGGACCATCGGGACCACCTGGACCTCCTAGTAATCTGATCGCTGCTTACATGGGTGGCTCTGGTTTTAGCACTGGAGCAGACAAAGGTGAGACCAGAAGAAAACGATCTTTAGAAGACGAAGAACCTTTGGACGACGAGATGTTGGATTCCATCAAAGCTTTGCGAACACAAATCGAAGAGATACGAAGACCACGAGGTGACACACAAGGCAATCCTGCAAGAACTTGTAAAGACTTGAAGATGTGTAAGCGCGCTAGCAAAGACGGTGACTACTGGATTGATCCCAACCATGGCTGCACCGAGGATGCTATTAAAGTCTTCTGCAACTTTACAGCTGGTGGAGAGACCTGTATTTATCCTGACACTATGACACGATCGGGTGAGCGTAAGAGCTGGAAGAAAGTCGAGGGAGCTGAGTGGTTTAGTGAATACGATGGCGGACATGAGATATCCTACAGAGGCGTTGGAAAGACTCAACTCAACTTCCTTCGTTTGCTGAGTGAAAAAGCAGTACAGAATTTCACGTATTATTGCAGTGGCTCCGTTGCCTGGTATGACAATGTCGCTAAATCGTACGAAAAAGCAATCCGACTGCAAGGCGATAATGACGACGTGATTGGATACCAGAAGAATCGATTTAGCATCAAGGTTCTTCACGACGGTTGCCAGAACAAGGAAAAAGACGGCAAAGCTATATTCCAAATTATAACAGAAGACCTCCACCAAATGCCAATTGTGGACTTTGCTCCCGGCGAAGTAAAAGAATCATTAGAATTTGGGTTTGAAGTAGGACCCATTTGCTTTAGTTAG

Transcript

Actinostola_11214

Protein

Actinostola_11214

SANFVRVFGLKDLPGNMTKASGLCTSRPRPDGGYEEDIAYRMENSQSAMSLPTRLLFPRKFPSNYVIMTTVKTEMDNVGSLFSIFNADRQLSLAFSVNPIGLKYRKPDGSIGKVTFGASLADGQWHRIALSIGERVIVMVVDCEEQVPSESVVDKPSDFPVSINTSGITVLGSDFKDGSYFRGVLHDLRIVPDSSQMGVYCLHYVPDCDRPTPRYVTRRTRQAPNIADRKGVIIGNTKYIKGDPGSPGGPGRSGDAGPSGPKGFSGEKGNRGPPGSTGPSGPAGPTGKEGPRGRTITVVWPPGQTKGPGARPPPASQMVVPPPVSGDQGPRGPRGQRGVSDQANIEAVLLLKTRAPKTVGDVRKLMGFLNYYRRYIRNFSRIARPIYDLMSVPPSSSCSPQKGVRKQNPKTGQPSSNTSVTWTTSHQSALEILIGYLVSPPVMAYPNYTDPFILTTDASEDGLGAVLYQRQNGITRVIAYGSRSLSPAERNYHLHSGKLEFLALKWAICEQFRDYLYYAPSFTVYTDNNPLTYVLSSAKLNASGLRWVGELADFNFCINYRPGKSNNDADMLSRAPLDISSYMESCTEEVTQDVLKTVVTAIQLQEDGRTTWISAITTDHSLLNLNITEIEANTTNLTEITTVEIRRAQRDDKAIGKVVSYLLSGKRPTAKEVLQEMPETRALLHEWRKLSLDDDGVLLRSPRRQVVLPDKLRRLVYQELHEKMGHLGSERVVSLARDRFYWPHMQRDIEHYVKNVCRCVKQRPPARKTKAPLQPIVTTSPFELVSLDFLHLEKSSGGYEYILVIVDHFTRFAQAYATRNKSARTVADKLYNDFILRFGLPSRIHHDQGGEFENRLFQRLEELCGISHSRTTPYHPQGNGQVERFNRTLLGMLRTLPEKEKYRWKDHLNKVVHAYNCTRHESTGYSPFFLLFGRDPRLPIDLIFGLRTPNASSSYPQYVSTWKNAMKEAYSLAQRSAVSGAAKGKRSYDTQGLPGSPGEKGTHGDPGLLGPAGPLGIRGSRGLAGKRGPPGPDGLRGPSGANGPKGDRGLDGIPGLPGHKGPRGIQGPRGDIGDKGEPGARGERGQPGTTGISGERGTQGEAGPKGPPGPRGLLGSPGERGPSGPTGPPGPIGAPGIQGIQGMRGPPGPTGIPGPAGPSGPKGDPGKIGMPGFPGADGLPGYPGIEGPPGPKGNRGPIGPRGPQGYQGLPGPKGNQGRRGASGAKGDEGTAGFPGEKGDDGPRGEDGTSGGPGLPGPEGREGPKGRTGLPGPPGVSGPSGPKGEQGVAGMTGYPGQAGAKGDQGPPGTRGRDGSKGSRGESGKLGPRGPRGRRGPRGERGSAGTPGASGNKGAAGEPGVPGDRGPLGPPGPQGDRGGPGAAGMMGLPGRAGLPGFPGPRGETGSQGKPGSAGNPGMPGPRGPPGDKGPQGPKGDLGRAGEPGEPGLAGDSGKDGKKGEPGKAGVPGKDGLSGPLGKAGPKGATGLPGVMGPKGVEGPNGASGQAGPIGPRGVPGLPGPQGPNGRPGPTGASGSTGEKGNKGEEGPRGDPGPAGKPGGSGKPGPEGPQGPSGDDGEKGAQGSGGPSGKKGDRGPNGPPGPPGPVGNPGKSGPQGPPGEQGVHGPVGPRGGKGPDGGRGSPGPQGQPGVPGVPGPRGQKGERGPSGPAGASGPSGARGARGPAGPKGDLGEIGDPGANGRVGDKGDRGPKGDSGASGIAGTPGRSGESGQKGARGDPGPQGPQGPRGPSGPSGDTGPIGQPGPSGPVGPQGPQGAKGNRGQDGEDGGPGKPGPRGAPGRRGDDGSPGPAGNAGEAGLKGYPGRDGEHGDKGDTGPPGPQGPLGSPGAQGPRGSRGLPGEQGAPGGSGDVGPQGITGPPGASGPAGDKGDKGDRGASGEKGDKGWSGFTGPVGPSGKQGEKGDQGSSGLIGYSGPKGDKGADGPDGPLGPDGPAGPRGHKGDRGPIGTRGDTGPSGPPGPPSNLIAAYMGGSGFSTGADKGETRRKRSLEDEEPLDDEMLDSIKALRTQIEEIRRPRGDTQGNPARTCKDLKMCKRASKDGDYWIDPNHGCTEDAIKVFCNFTAGGETCIYPDTMTRSGERKSWKKVEGAEWFSEYDGGHEISYRGVGKTQLNFLRLLSEKAVQNFTYYCSGSVAWYDNVAKSYEKAIRLQGDNDDVIGYQKNRFSIKVLHDGCQNKEKDGKAIFQIITEDLHQMPIVDFAPGEVKESLEFGFEVGPICFS

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001791	Domain	Laminin G domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR048287	Domain	Thrombospondin-like, N-terminal domain	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0030020	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-