Gene detail

Detailed information of Actinostola_11081 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_11081	DNA HELICASE RECQ FAMILY MEMBER	scaffold179_size516844	170274	188540	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_11081

ATGGAGGAGCTCAATACGCTTAAACGTGAACTAAAATGCTGGGAAAACATGTTTGAGAGAAAACATGGCCGCCGACCAAACAAAGATGACATTAGGAACGCTTCAGATGAAATCAGAGACACGTATGTCAAATATAAACATTTAAAAGAAGCAAATGCCAAGATTAAAAACAAGACTGAAACAGAGGAGGAGGATGATGGTGTGTTTGGTAAGAAATGCAACAAACAGTTTGAACATAAACAACCCTTAGCCACAGTACGGTTGAAGAATGGCTGGGCAAATATCAAGCCTGTGCGTCTGTGTCATGGACAGAGACCCAAATCCAAGGATATCTCACCAACTGAGAAAAAGTCTGAAAATGAAAACTCACATGAAGCTAAAAGTAATGATAACGAAATAGAGACGATGGGTTTGACTGTTGTTGCCATCTCAAATGCTACAAAGACTCCAAGGCGAAGCTGCACTCCAAATCAGATCACAAGCAGTTTCAGAAAAACTCCAGGCACAAGTGAATCAAGACTGAAAAGAAGAGCATCGCTTTATGCTACCTCCTTGAAAAAAATTGAAAATAAGGCCGAGGAAGAGAATGCAGCAGGCAATGACTTCAAGGGAAAAGAGGACCTTGTTGCATCAATCAAAACAAATGAAGCACTTGCAAGGAAAGGGAGTGTTGAATTGGATTCAAGTGAGAGCTATTCTTGCAGAGAATATGAAGATCAAGATGATGAGAATCATCATCATGAGAATAAGAAGATGAATGATTTATGTGAAACAAGAGATGATTTGAACTCTGTTGAGAGTAGCTCCATGAGAACTGAAGAAGCAGAACAAGTGACATCCAATAGTGATAGAAAGTTAGTGACAGACTTGAGGACAACTACTTTGAATGGAAATCCTTCATTGCACTGTGAAGATTCTTTGTCGTCAAGGCCATCGCACATAGCTATGGACTATGGACTATCTCATACAAAGAAGCCACGAATAACAATTGAATGTGAGAAGTCAAACCGTGCTGCCAAACATACAAACAGTGGAGGACATTGTGAGAAAACTGAATATGAGGAGACAGAAAAACCCTCGGCAAGAGATACTCCAAGGATAGGAAAAGAAGAAGAACAACTACATGTAGATAGCTGTAATGCGATTGGTCCAGATGGTCATTCAGATACCACAGATACTGAGAGAGCCTATGAGAACAAAAACACAAGGAAACGAAAAGCTGAACCAGAAGTTGTATCAGATGTAAGAATGCCAGATTTAAAGAAAAAAAGAGCCGATAAGCTTCTGGACTTGTGTGACAATAGGAACACTGATGGTTCTGAAGAAGAACAAGACACTCATTCAGACGAAGGACCAGACGAAGCTTTTGAAGAAGTGAAAATTAAAACTGGCACCTCTAAAGCAAGGACCTCCTCATCTGGTCTTGTCAGTGAAAACTTTGTAAGACTGAACATGAAGCATAAAGCATATCGTCGTCGTGGTCACGGGATGACAGGTTCAGCCTATAAGCGCAGAGCTTTTAACAACATCATGAAAGCACGTGGGGAATACGTTAGTAAATCCAGCTGGTCTCGTAGGGGGGCTGGTGGACGTGGTGGGCGTGGTGGAGGTAGAGGGTCTTGGGGCGCATCCAAAGGTACGACTGGGGCCTGTTACAAGTGCGGACAAGAAGGTCATTGGGCAAAGAATTGTAAAGGCAAAGCAGCCACGCCAATGAGAGAGCTACCCGAGGAAGATGATGACAAAGAAGAGTTCACTCCTGAAGACGATACTTTTATTCAAGAACTCACTTTGGAAAAGGCAGCACAAATGGCTGCTGGGGTCACTGTGGATGAGGACACCATGGACAGGGGTCTCGTCATATTACCCCATCAGCTACCACGCCCTGCTTATGTACCACCTTCACCCCCTGAGGCTATTGAGCCATTGTTTGAAACTATAGATAGAAAAATTAACGAGACACCAAAAGAAGTGTATACAGCGCTCGGTCAGTTGGGATTCTCCACCTTTCGCTCTGGTCAAGAAGAGGCGATTGTGCGCATACTGAGTGGTGTGTCGTCTCTGGTCGTGCTATCTACTGGTGCTGGCAAATCTCTTTGTTATCAGTTACCCGCATACATGTACTACAAGCGATTCCCTTGTCTTTCACTGGTCATATCACCACTTGTGTCTCTCATGGAGGATCAGATCAGTGGCCTTCCCTTCGGTCTCCAAGGAGCGTGTCTCCACACAAACCAAACCAAAGCTCAGCGAGAAAAAATCCTTGAACACATATCTTCAGGAAAGATAGCTGTGTTGTTGCTGTCACCAGAAGCCTTGGTGGGTAGGGGTTCGGGAGGTGGGTGTCTTCCGGCCAGTACACGTCTACCACCCATTGCGTTTGCCTGTATCGACGAGGCACACTGTCTGTCTGAATGGTCGCATAATTTTAGGCCGTCGTATCTACGAGTGTGTAAGGTACTTCGGGAGCGCTTCGGAGTACGATGTTTCCTGGGTTTGACAGCCACTGCAACTCGCGCCACTGCAGCATCAGTCGCTCAGCATCTTGGGATATCTAACGACGAGGGTGCTGTCATCAGAGGTGCTGCCGTGCCTCCTAATTTGTATTTATCGGTGTCACGTGATCGCAATAGAGATAAGGCGCTGATCGAGCTTCTCCAAGGTCCTCGATTCTCAAAGTGCGAGTCCATTATCATCTACTGCACTCGGCGTGAGGTAACGGAACGTGTGGCTACCCTCGTTAGAACATGTCTACAGCACATGACTCCTGTACAGAAACCAACTATCGATGACTTGGAAGAACAGCCGACGAAAAAGAACTCAAAGAAACGTGGCAAAAAGAAAGCACCAAGAGCCCCTCTAACCTGGGAGGCTGAGAGCTATCATGCCGGTATGACTCCAGCCCAACGACGTCGCGTTCAAACGCGCTTCATGTCTGGGGAACTCAGACTTGTCGTTGCGACTGTGGCATTCGGTATGGGTTTGGACAAGTCTGACGTGCGTGCGATCATCCATTACAACATGCCGAAGAGTTTTGAGAGCTATGTGCAGGAAATTGGTCGCGCTGGACGAGATGGGTTACCCTCACATTGCCATGTGTTTCTGGATCGAGAGGGTAAGGATATGTGCGAACTTAGACGTCATATTCACTCCAACACTGTGGACAGGGTCATCGTGAAGAAACTCGTCAACAAATTGTTTCCACGATGTGAGTGCTTAAAGTTACATCGCGCACAGAAAGGGCGTGAATCACAACGTCTTGCCGCCAAGGAAGCAGAAGATATGGAGGATGACAGTTTGATCACGGATGATATGTTGAGTCAGATCTCTGAGGAACAGATGATCAACGGAGCAGGGAATCCCCCTCAGGAAAATGACAAATTGGAACAATTGATCAACTCATGTAATCCCCCTCAAGAAAATGACAAATTGGAACAATTGATCAACTCGGGGAATCCCCCTCAGGAAAATGACAAATTGGAACAGTTGATCAACTCAGGGAATCCCCCTCAGGAAAATGACAAATTGGAACAATTGATCAACTCAGGGAATTCCCCTCAGGAAGACAATTTGACAAGCAGTGAGAGTAAACTTCTTCGCAACCCACAACCCATCTTGGAAGAAGAAGGTCTAGAGAGGAAAGATGGCAACACAAACCCCGCTGTTGTAGAAGCGCACAATCAACATGATTTTAGTTCCTGTGAGCAAAGAGATAAAAACGATGAAGACAATATTTCTGAAGAACTCAGCAATGTTGATCACGAGTCTTCATGCCCACGCATCTGTGGGGGGCACGACGTTGCCATGCCAACTGAATCCGCGGTCCAAGAACTCGACATGCCAGAAGAAAGCATTGCCACTTTGCTTTGTTATCTGGAGCTACACCAAAAATGCTGGCTTGAAGTACTGAAGCCTGTTAGGTCGACTTGCACCGTTAAGTTCTACGGCGGGCCTGCCCACTTGAAGGCTGTGGCCAAGCGAATTCCACCAATAGCAGCCGCTCTTGTTCACTGCGAGAAGAAAGAAAGAAAGTTTAAGAAGCAAAGTTCGCTTGTGTTTCCGATTGTTGAAATTGCGGACAAAATGGGTTGGGATTTAGATCCTGTTTATAAAGAACTCTGGGCACTACAATGGAACTCATCCCTTGCTCCTGACTCGACGATGAGCTCATCCGGGCAGTCGGGTATCTTGGTTGAGTTCAGTGATAACTCGATCCATGTACGAGCACCAGGCGACTTGAGTGACGACGAGAGAGACGAAGTATGCGACTTTCTGGACGATCGAATCCAAGCCGAAGAACAAACCCAACTTAAGCAACTCGCCATGTTGTATTCATCTCTGCATAAAGTCTCTTGTAGTGAGTACTGGCAGTGTTCTGAAGAAGTCGACAAAGACAGCGACATAGAACTCAAAACACTCATCAAGGCTTTCTTCGAGGACCTTGGTAACGCCACTCAAATCGAACTCGAATCCCTCAAGAAAAAGCGGGAAGATGACGCGTGTTGCACCGATAGTTCACTACCTGATGAGCACGTGAACTGGGACGGTATTTCACGTGATATCCGGACCTTGACAAACATACATCATGACCAGTCGTTCACAGGCCGCGCCGTTGCGAGGATATTTCACGGTATAAGTAGTCCGTGTTATCTTGCAGAGGTCTGGGGACGAGATAGACGTTTTTGGAGAAGGCATCTGGACGTGGATTTCAACAGTTTGAGACGATTTGCGATACGTGAGCTGCTGAAACTCAGATAA

Transcript

Actinostola_11081

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF11719	Drc1-Sld2	DNA replication and checkpoint protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR021110	Family	DNA replication/checkpoint protein	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006268	Biological Process	DNA unwinding involved in DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0009378	Molecular Function	four-way junction helicase activity	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-