Gene detail

Detailed information of Actinostola_10395 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_10395	ENDONUCLEASE-RELATED	scaffold154_size548820	133784	138676	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_10395

ATGTCTCTGTCTGCTGATGATGCAAAGACCCTACAAGAGAAGGTCGAACTGTTGCTGAAAGAACAGGAGGTAGCGAAGAAGGCCCTTGAAGACCTACAGAATCCATCACGTTCAAGTGGAGTCAAGCGTCAGTTTGTTGTCGTTCCACGAGAAAGAAAGATAAAAACATTCTCTGGAAGACCGAAGGATGGCTCTAGTGAACAGACGATTGAGGAATTCATTGAGGAAGTCAAGACAATAATCGGAGCAAGGGACATGAGCAAGGCTGAGCAGCTTGACTTCATCACCTCACATCTAGAAGGAGCTGCGAAAGAAGAGTTGAAAGTCTACCCAGAGGAGGATAGGAGAGATCCCAAGAAAGTGTTCGAAATCCTTGGCGATGCTTTCGGCGAAAAACGCTCGAAGCCGCAACTCTTGAAGGCATTTTACGATCGAAGACAGAAGGACGGAGAGAGTCTAAGAGAATTTTCACACGCTTTAAGTGAACTGTGGACTCGTGTTGTGAAAAAGGACACGAAGTGTTCGGCGGACTCGGACACCATGCTACGTGATCAATTTGCGGACAACGTGCGTGACGCTTTACTGCGGAAGGAACTTAAACGCAGTATAAGAGTGCGACCTGGTATTTCTTTTCTGGACATTCGAGAAGAAGGAATAAGCTGGTCTGAGGAAGAAGAAAAGTCGCCTCACGCAACCCAGCGTTTCAGAAATACCACAAGTACTTCGGAGGTCAAGGCTGAAAGTTGTATACTTCAAGGGAAAGACCCGCAGGATTCAATATTGCGTGACCTTGCCAAAATGTTGCAACAACAGCAGGAGGCTATAAAAGAGTTAACTGCTGCTGTGGCTCGACTGAAGTCGTCACCTGAGAGAAAACCGCAGGGACAACTGTGTTACAAATGTCGGAAACCTGGACATTTTGCTCGTAATTGCACGCAGAAAGAGCCGGATACGCAAGCTGAACTTACTGAGATGCAGAACAGTGATGCAACAATAAGCCAATTCCTGAAATACTGGAAAGAGGGAAGAAAACCAAACTTCCGTGAGCGAAGGGGTATGCCTAGCAAATCCATATCCATGCTACGCCAGTGGGATAGGATGCAACTGGACGCTGGAGTGCTGTACAGAGTAGTACAAGATCCAAACCATGGACAACTCAGACAGCTTGTTGTACCCACTGTGTTGAGAGACAACGTCATGCAGAGTTTACATGATCAGATGGGACACCAAGGAGTTGAAAGGACATCTCAGCTGCTGCGCAGAAGGTGTTACTGGCCTGGACTACACAGTGATGTAGATGTTTGGATAAAGAAATGTGAGCGTTGCACGTTATCCAAAATGCCACTGCCACGCATCAGACCACCAATGGGAAACCTCTTGGCAACAAAACCATTGGAAGTTCTGGCTGTAGATTTCACTCTCCTGGAACCAGCGAGTGATGGACGAGAAAATGTGCTCGTAATGACTGACGTATTCACCAAGTTCACCTTAGCTATACCGACAAGGGATCAGAAGGCTAACACAACAGCTAAACTGATACTCAAGGAATGGTTCATGCGATATGGCGTACCTGACCGCATCCATTCTGACCAAGGACGTAACTTTGAGAGTGAGGTAATCATGGAGCTGTGTGGATTGTACGGAATAAAGAAGTCGCGAACAACACCATACCACCCACAGGGTAATGCACAATGCGAGAGATTTAATCGCACGATGCATGACCTTCTGAGATCTCTTCCGCCTCACAAGAAGAGAAAATGGACGGAGCATTTACCGGAGCTGCTGTACGCATATAATGCAACGCCCCATTCATCAACCGGATTCTCGCCATACTACCTGATGTTCTGCAGAGAACCTCGACTACCTGTCGATCTGTTGTTAGGAGCAGAAGAGGATGTTGAAGATGAGATCCAGAATGACTGGCTGGCTACACACATGTCCCGCCTGAGAGACGCTTACCTCAAGGCAGGAGAGCATCTCGAACAAGCTGCAGAAAGGCGCAAGAAGGCTAGTGACCAGACAGCATTCGATGACCCACTAGAGATTGGTCAACTCGTGTATCTCAGAAACAAAGTGAAAGGAAGAAACAAGATTCAAGATTCATGGAGCCCTACCCTATATAGAGTCATAGGAGTTCCAGACAAAGATGGCGCCGCATATACAGTTCAGTTATATAAGGGAGACGCGGAGCCACGAAAA

Transcript

Actinostola_10395

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF14893	PNMA	PNMA	Family	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR048270	Domain	Paraneoplastic antigen Ma-like, C-terminal domain	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-