Gene detail

Detailed information of Actinostola_08095 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_08095	RNA BINDING PROTEIN	scaffold9_size1364994	671586	689138	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_08095

ATGGATTACTTTGAGGAGCAAAGAGAAGAGATTGATTCCTTAACAGCAATATTTCCAGATGAGTTTGCTGAACTCAGCATTGATCCTCCATGTTTTATGATTCGTCTTGATGAATTAGACATTCCATCCTCTGGAGCTGTTCAACTCAAAATCACATTGCCGAGAACTTATCCCGATGATACACCATCGATAGCAATCCCTAATCGATCTAAAGCACTTCCCATAGAAATAGCTAATGAACTGCAAAAGTACCTCGTAGCGGTCGCCAAGGAATCTGTTGGAATGGCTATGGTTTTCACTCTTGCCAATGAAGCCAAGGAGTGGATCAATATCAACAGTTATAGAATAAAAGAGCTCGAGTGCCAGGCAAAACCTTGTGATGAACAACTATCGTCTGAGGAGGAGGAGGAGAAAGAAGACTTGTCTGAGAGTACAGTGTATTCAGACAACAAGAGTGGAGGCCGGTGGGACTATGTGATTGGACTGATTGGAAAGCCGTCAGCAGGAAAGTCAACATTCTTCAATGCAGCTACACAGCAAAACTTTGCAAAGATTGCAGCTCATCCTTTCACAACAATTGAGCCAAATATCAGCAAAGCCTTCTACTCAATTCCTTGTCCATGTTCATCTCTTGTTAGTAAATGTCATGCTAGGTATGGGCATGACAGCAAGGGTTGGCGATATGTGCCAGTCTTGTTGAAAGATGTTGCAGGTTTGGTACCTGGAGCTTGTGAAGGGAGAGGCAAAGGAAACAAATTCCTGAATGATCTTCTTGACGCAGATGTTCTTATTCATGTTATTGATGTGTCTGGTGAGACTGACGAAAATGGAAAAGAGACATCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACAAAAAAACAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCCTATCCCAGACCCTATCCCAGACCCAAAAACCAGACCCTATCCCAGAACAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAACCAAAAACCAGACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAACCAGACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATACCCTATCCCTGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATACCCTATCCCAAACCAAAAACCATACCCTATCCCAGACCCAAAACCCATACTCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAACCATACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACCAAAAACGACCACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCATATCCTATCCCAGACCAAAAACCATATCCTATCCCAGACCAAAAACCAGACCCTATCCCAGAAAAAAAAACAGACCCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCCTATCCCAGACCCTATCCCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGAACAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCCAACCAAAAACCATACCCTATCCCAGACCAAACCCATACTCTATCCCAGACCCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAACCATACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACCAAAAACGACCACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAACCATACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCCTATCCCAGACCCTATCCCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGAACAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAACCATACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAAACCAGACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAACCATACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACCAAAAACGACCACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAACCATACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCCTATCCCAGACCCTATCCCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGAACAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAACCATACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAACCAGACCCTATCCCAGACCAAAAACCATACTCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAAACCATACCCTATCCCTGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAACCCATACCCTATCCCAAACCAAAAACCATACCCTATCCCAGACAAAAACCCATACTCTATCCCAGACCAAAAACCATACTCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAACCATACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACAAAAAAAACGACCACAAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCATATCCTATCCCAAACCAAAAACCATACCCTATCCCAGACCAAAACCCATACTCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCAAAAACCAGACCCTATCCCAGACCTGACGAGCTCAAAATCCATACCCTATTCCACGGCACATATACATACCTGCCAACCCCCTGGAACCTCAAATCTGGAGAATGGACAATCGGGACGGTTATTTCTTCGTAACTTGGCCTATACCTGCACCGAAGATGACATTCAAAAACTCTTTTCCAAGTATGGTCCTCTCTCAGAAGTGAATCTACCTCTTGATAGAGTAACAAGCAAAACTATTGGGATTGGATATGTCACCTTTTTAATGCCTGAGCATGCAGTTAAGGCATTTAATGAACTGGATGGATCAGTCTTTCAAGGCAGGCTACTGCACATTTTACCTTCAAAGGCCAAGAGAACAGAAGAAGACAGTGCAGGAAATGATAATGATGTAATAATACTGATGTTCTGTGTATTCAATCTACCAAAAACAGTTGACTCGTCTTACAAAAAGAAGAATAAAGACAAAAAGAAAGCTCAAAGTGGAAGTGACCACAACTGGAATACACTGTTTCTTGGTGTAAATGCCGTGGCTGATGCGATGGCTGATAAGTACAATACCACTAAGAGAGGTATATTAGATGCAGAATCATCTAATAGCCTTGCCGTTAGGATGGCATTGGGTGAGACACAAGTTGTAGCTGACACCAGGAAATTCCTTGTTGAAAATGGAGTCAAACTCGATGTTTTTGGACAGGCTGCTTCAAAACGGAGTAAAAATGTTATGATAGCCAAGAACCTCCCTTATGGAACAAGCACAGAAGACTTGAGAACAATCTTCTCTCCCTTTGGTCAGCTACAGAGAGTTGTGCTTCCACCTACGGGCATCACAGCTCTTATAGAGTTCCAAGAACCTAGTGTAGCAAGGAAGGCTTTCCAAAAACTAGCTTATACAAAGTTCAAGAATTCACTGTTGTATCTCGAATGGGCCCCAATAGATGTGTTTGTGGAAGGAAGTCAAGATAAAGAAACTGCACAAGATGTACCGATTGATAGCAGTGAAGGCAAAGATGTGGATGTTTCAGAGGAAGACAGTGAAACGGAGGAGCAAGATGGCAAAACTTTGTTTGTGAAAAACTTGAACTTCGATACGTTGGAAGACGTTTTGAAGGAGAAATTTTCACAAGTTGGCACTGTAAAAAGTGTTACTATTGCCAGAAAGAAGGACTCAAAGAACCAAGGAGCTCTTCTTTCTATGGGATACGGATTTGTGGAATTTAAAAAGAAATCATCTGCTCTCAAAGCATTGAAAGAGCTACAGCACTGCAAGGTCGACGACCACGCTCTTGAACTCAAGGTATCTCATCGAAAATCAAACGACAAAGTCACCAAAAGACAGCGAGCTTCTACTACTAAACAGAAAAGCTCCAAAATCTTAGTTCGAAACGTCCCCTTTGAGGCAACCACCAAAGAATTGCGGGAACTTTTTAGCACATTTGGTGAGATTAAAACTCTACGTCTCCCCAAAAAGATGGTGGGAACAGGTCCCCATCGTGGCTTTGCCTTCGTGGACTTTTTAACTAAGCAAGACGCCAAGCGTGCCTTCGAGGCTTTGTCTACAAGTACTCATTTGTATGGCCGTCGTCTTGTACTTGAATGGGCTGAGGAAGACGATGACGTAGATACACTTAGAAAAAGAACAGCCAAACATTTTCAAGAGCCGAGAAAGGCGGAGAAGAAGAAAAAAGAAATGTTGGATGACCTCATGGAAATAACGGAGGAATCATGA

Transcript

Actinostola_08095

Protein

Actinostola_08095

MDYFEEQREEIDSLTAIFPDEFAELSIDPPCFMIRLDELDIPSSGAVQLKITLPRTYPDDTPSIAIPNRSKALPIEIANELQKYLVAVAKESVGMAMVFTLANEAKEWININSYRIKELECQAKPCDEQLSSEEEEEKEDLSESTVYSDNKSGGRWDYVIGLIGKPSAGKSTFFNAATQQNFAKIAAHPFTTIEPNISKAFYSIPCPCSSLVSKCHARYGHDSKGWRYVPVLLKDVAGLVPGACEGRGKGNKFLNDLLDADVLIHVIDVSGETDENGKETSDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDKKTDPIPDQKPDPIPDQKPDPIPDQKPDPIPDPIPDPIPDPKTRPYPRTKTRPYPRPKTRPYPRPKTRPYPRPKTISYPNQKPDPIPDQNPYSIPDQKPYPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPYPIPNQKPDPIPDQNPYSIPDQKPYPIPDQKPDPIPDQKPYPIPDQKPYPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPYPIPNQKPYPIPDPKPILYPRPKTIPYPRPKTRPYPRPKTRPYPRPKTIPYPRPKTRPYPRPKTISYPKPKTIPYPRPKPILYPRPKTTTKNHTLSQTKNQTLSQTKNQTLSQTKNHTLSQTKNHILSQTKNHILSQTKNQTLSQKKKQTLSQTKNHTLSQTKNQTLSQTKNQTLSQTLSQTLSQTLSQTKNQTLSQNKNQTLSQTKNQTLSQTKNQTLSQTKNHILSPTKNHTLSQTKPILYPRPKNHTLSQTKNQTLSQTKNQTLSQTKNQTLSQTKNQTLSQTKNHTLSQTKNQTLSQTKNHILSQTKNHTLSQTKTHTLSQTKNDHQKPYPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPYPIPNQKPYPIPDQNPYSIPDQKPYPIPDQKPDPIPDQKPDPIPDQKPDPIPDPIPDPIPDPIPDQKPDPIPEQKPDPIPDQKPDPIPDQKPDPIPDQKPYPIPNQKPYPIPDQNPYSIPDQKPYPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPYPIPNQKTRPYPRPKPILYPRPKTIPYPRPKTRPYPRPKTRPYPRPKTISYPKPKTIPYPRPKPILYPRPKTTTKNHTLSQTKNQTLSQTKNQTLSQTKNQTLSQTKNQTLSQTKNHILSQTKNHTLSQTKTHTLSQTKNHTLSQTKNQTLSQTKNQTLSQTKNQTLSQTLSQTLSQTLSQTKNQTLSQNKNQTLSQTKNQTLSQTKNQTLSQTKNHILSQTKNHTLSQTKTHTLSQTKNHTLSQTKNQTLSQTKNQTLSQTKNQTLSQTKNQTLSQTKNHILSQTKNQTLSQTKNHTLSQTKNHTLSQTKNQTLSQTKKPYPIPDQKPYPIPDQKPDPIPDQKPDPIPDQKPDPIPDQNPYPIPNQKPYPIPDKNPYSIPDQKPYSIPDQKPYPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPDPIPDQKPYPIPNQKPYPIPDQNPYSIPDKKNDHKKPYPIPDQKPDPIPDQKPDPIPDQKPYPIPDQKPDPIPDQKPYPIPNQKPYPIPDQNPYSIPDQKPDPIPDQKPDPIPDLTSSKSIPYSTAHIHTCQPPGTSNLENGQSGRLFLRNLAYTCTEDDIQKLFSKYGPLSEVNLPLDRVTSKTIGIGYVTFLMPEHAVKAFNELDGSVFQGRLLHILPSKAKRTEEDSAGNDNDVIILMFCVFNLPKTVDSSYKKKNKDKKKAQSGSDHNWNTLFLGVNAVADAMADKYNTTKRGILDAESSNSLAVRMALGETQVVADTRKFLVENGVKLDVFGQAASKRSKNVMIAKNLPYGTSTEDLRTIFSPFGQLQRVVLPPTGITALIEFQEPSVARKAFQKLAYTKFKNSLLYLEWAPIDVFVEGSQDKETAQDVPIDSSEGKDVDVSEEDSETEEQDGKTLFVKNLNFDTLEDVLKEKFSQVGTVKSVTIARKKDSKNQGALLSMGYGFVEFKKKSSALKALKELQHCKVDDHALELKVSHRKSNDKVTKRQRASTTKQKSSKILVRNVPFEATTKELRELFSTFGEIKTLRLPKKMVGTGPHRGFAFVDFLTKQDAKRAFEALSTSTHLYGRRLVLEWAEEDDDVDTLRKRTAKHFQEPRKAEKKKKEMLDDLMEITEES

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF05773	RWD	RWD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR006575	Domain	RWD domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR034421	Domain	Probable RNA-binding protein 19, RNA recognition motif 6	Interproscan
IPR034423	Domain	Probable RNA-binding protein 19, RNA recognition motif 5	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-