Gene detail

Detailed information of Actinostola_07937 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_07937	CXC DOMAIN-CONTAINING PROTEIN-RELATED	scaffold970_size176582	149347	166471	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_07937

ATGATATGTGATATTGAAAGTTTGACCGAGCAGGAATTGTTGCACTTTGAACCCAAAAATGCCCAACTTCGAGTGCGAAATCTAAAGGCTCGTCTAAGAGTACGTTTTGAGGACGAGGAAGGTGCAGGCAGTGGGCCGGTGAGGGAATTCCTATCATGTGCCCTTAAAACTATTGATGAGGGAATCTCTACGACCTCCAAGCCAATCATCTTCTTTGAGGGTCAGAAGGACCATAGGTTGCCAATGCAAGACCAGGCCTTGAGACTCACAGGTGCTTTCAAGGCCATTGGAAGGATAATTGGTCACTGTGCTCTGCACAATGGCCCATCCCTACATGGGATATCACCAGCAGTGCTGCATTACTGGGCCAACCCCTCACAGGATATCGAAGAAAGACCTCCTACCGTTTCACTAGACGATATCGCAGACCTCGATGTAAGGGAATGTATCATGGAGCAAAGTAACATTGGTTACTGTCCGATGATTAATGGCTCTTCCACGAAATACAGCACCATCTACACTGTTCTGAAGCATGCTCAAATGATCAGCGCAACCCTAGGTCAAGCGGACATTGTCATCACATTTGATCTTGCCATATACATGAAAGCAAAGCAAATCCAGTGGAGATATCCGGAAGAATTTTCCGACCTAGTAGTACGCATGGGTGGATACCACATTGCGCTTAATTACCTGTCACTGTTAGGAAAGAAGTATCTCAACACAGGCCTTGACGATGTTTTAATAGAGTCAGGTGTGTACGCCGCTGGTACAATATCTGTGCTGATGAAAGGCAAGTCCTACAACAGAGGAGTTCGAGCCCATAAGCTGGCAATGGAAGCGCTATTCAGGCTAATGTGGAGAGCGTTTGTGCAATGGTACAGCAACACCCATGCAGATAGCCACAATGACAACGGAACTCTGATACAGAACATCGCTGATTGTGTTAAAGTCGTAGAGAATAAGGGCCACGTCTCACAGCAGGTCAAGGTTCTAGAAGTGGAAGTGACGGAACTAACATCTTTATTTGAAGCATTCAAATCGGAAGCTAGAGCCAAATCCAAGATGTTTGCTTTTTTGGAACAGTATGGCTCCATGGTCAACGCCCTCTTACAGTTCATTAAAGCTGAAAGAACAGGAAACTGGGACTTGCATCTTTCCGCTGTTGCAACTATGCTACCCCACTTCTTTGCCATGGACAGGCCGAACTATGCTCGGTGGTTGCCTGTTTATCTTGCTGACATGAAGCAGTTGGAAACTAAACATCCACTTGTACACCAGGAATTCGCTCAAGGAGGTCATGCTGTAAGCCGCTCCGGCAAGCCATTTGCGCAAGTTTGGACAGACATGGCTCTTGAACAGTCTGTGAACGCTGACTCGAAGTCAAAAGGAGGAATTATATCGCTGGATGAGACTCCCATTGGTAGCAGCGTGGCAAGTGAGATATTCCAAAAGAAATTGAACCAAGTGCTCGATCGACTTGATGGTCTACTTACAGTGCATGACGACAAGGTTATATACGGAGTGGAAGAGACAGAAGAGGAGGCGACTGCTGATCACAACAAGAAGCTTCAACACTTTCTGCTGCGCTGCAAAGAGAAGGGCATGAAGCTCAACAAGAAAAATCTGAAGCTGAAGTGCAAAGAGATCACCTATCTTGGCCATTTGATCACACAGAATGGTCTCAATCCAGACCCAGAGAAAATAGAGGCAGTGAAAAAGATGCCAAAGCCCACTAACGTGAAAGGAGTACAACAATTCTGTGGATTTGTCAACTACCTTGCAAAGTTTCTACCTCGATTAGCAGAAACGATGGGGTCAATACAGCAGCTAACACGGAGAGATGTGGATTGGCAATGGCAACCAGAGCACAACGCAGCATTCGAGAAAGTTAAAGAAATCGTCACAACGGCACCACTACTAAAGTACTACGACCTAGCAGAGGAGCTAATGAGCAAGTATGACACAAAAGAACAGAAGGAGACGTTCATGAGCCATGAAATTGCAGAGCGTCCATGGGAGAAAATTGGTACAGATCTGTACATCATTGATGTAAAAGAATACCGTATTGTCGTCGACTACTTTTCGAATTGCTGGGAAATGGATCCCCTACCCGACACGAAAGCCAGCACCATGATCAAGAAGCTCAAGTGTCATTTCGCCAGACAAGGTATTCCAGACACAGTCATCAGCGACAATGGCCCGCAGTTCGCCTATGAGAAGCTTCATGAGTTTGTGACAGATTGGGGCTTCGAGCACCGCACTGGAAGTCCTGGACACCAACAGACCAACGGCAAAGCCGAGATAGCTGTGGAAGAAGCGATACGACTTCTACGAAAATCCAAGGAAACCAGTGGGGACATCTACCTGGCACTGTTAGCACTCTGCAACAAGCCAAGGACACAAGCCCCACCCAACGATTACTAG

Transcript

Actinostola_07937

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46704	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-