Gene detail

Detailed information of Actinostola_07156 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_07156	PROTEIN CBG26694	scaffold809_size208136	83633	108624	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_07156

ATGGGAGACCACGAGGTGGAAGATACACAATTTGAATTAGAGGCCAAGATCTACGGATTGTCCAGTGAGCGTTTGCTAGAATTGGCGGAAAGGTTCGATATTCAAGTTGTGGAATCAAGGAGACCTGCTATCACAAGATGTATTGTTGCGGGGATTGCAAAGTTAGTTGAGAAATCGCCAAAGAAGATGGAATTCTTAGCAGAGATTAGTGATTTCATAAACGGAAACCCTCCCCCATTGGACACATCTGAAGTTAGCGGGGTTAGCTCGGATTCAGTATCTGGTAAGAAGCCTTCTCAAAAGCAACGCTATACCTCAATTCCCAAGCCGCTATACCCAGAGGTAAAACACTATGTCGAAGATCTGCTTAACAAAGGGTGGGTTAGAAAGTCAAGATCGGCGTATTCGTCCCCAGTCGTGTGTGTCAGGAAGAAAGACGGGAGTTTACGACTGTGCGTCGATTATCGTAGACTGAACCAGAAGACCATTCCAGACAGACACCCCCTGCCTCGCATCCAGACAGTTCTTGAGAATCTAGGCGGTAACCACTGGTTCACGTTACTTGATCAGGGTAAAGCATACCATCAGGGTTTTATTCACCCCGACTCTCGTAACGTAACAGCCTTCATCACCCCGTGGGGATTATACGAGTGGGTTAGGGTTCCCTTTGGCCTCATGAATGCACCTGGCGAGTTTCAGCGTTTTATGGAACACTGCCTTGAGGGGTTGCGGGACAACATTTGTATCCCATATTTAGACGACGTGATAGTCTTTAGTGAAACGTTTGATGAACACGTCGAGCATGTCAGACTAGTTCTTCGCCAACTACGACAACACGGCATCAAGCTAAAGTCCAAGAAGTGCGAGCTTTTCAAATCAGAAGTTAAGTATCTTGGCCAAATTGTATCGGCGGAAGGATATAGGGTTGATCCGGCTAACACGAAAGCAGTGATGGAGTTGAAAGAGCGAAAACCGTCTACCGTAGGGGAAGTCAGGAAACTCCTTGGACTGCTGGGGTATTATCGGCGTTATATTCAGGACTTCGCAAAGATTGCAAGACCGTTGTTTGATTTACTACAAGCGCCACGAGATAGTCGAAGCGGGGACCGGGATAGGTCAAGACAAAGCCGTCTAAGCACTAACGACAAGACCGTGTCATCTAAGCAGCGGATTACGTGGACTCAGCAACATCAAGCATCCCTTGTACGGCTGATCGACTGCCTAACTACTCCACCGATAATGGCATACCCAGACCATAGTCAACCTTTTGTACTGCATACCGACGCGTCAAATGATGGACTTGGTGCGGTTCTGTATCAACGGCAAGAAGGCAAAATGCGAGTGATAGGATACGGTTCCCGCGCCCTTACGGCAGCAGAAAAGAATTATCATTTACATTCAGATCACTTCACCCGATACGCACAAGTTTACCCAACGAGGAACAAGACTGCGAGCACTGCGGCAGAGAAGATTTTCAACGACTTTATCCCGAGGTTTGGTTACCCGGCAAGATTACATCACGATATGGGAGGTGAATTTGAGAACAAGTTGTTCAAGAGCTTAGAACAACTAACGGGAGTCATGCACTCGCGAACGACACCCTACCACCCCCAAGGCAACGGTCAAGTAGAGAGGATGAACAGAACTCTTCTTGGCATGATGAGGACACTGCCTGAACAATACAAAGCCAATTGGAAAGACCACGTACACAAATTGGTACATGCTTACAACTGTACGAAACATGAGGCAACCGGTTATTCCCCATTCGAACTGTTGTTTGGACGGCCACCTCGCCTGCCTATTGATTTAGTTTTTAATTTGAAATCTGAGGAAGACGATACTTCGTATCCTAAATATGTGGAAAAGTGGAAACGCGCTATGGAAGAGGCCTATGCTAAGGCCAGTAAAGCTGCAAACCAGAGCGCTGTGAAAGGAAAGAAGCAACATGACAAACGACTAAGATCATCTGTACTACAACCGGGAGACCGTGTATTGGTACGCAATTTGACGCCACGTGGTGGACCAGGGAAGCTCCGCGCATACTGGGAAGACGAAATCCATGTGGTGGTATCGCGTAAGAGGCCAGACAGCCCTGTGTATGTACTTCGCCCAGAATCGGGGAGGGGGCGAGATCGTACACTTCACCGTAATCTACTTCTGCCATGTAGTTATTTACCAGTAGAACAACCAGATTTGCGACGAGATGCAAGGCCGAGGCGTGTAGCGGAAAGACCTCCAACTCCGTTTCCTGCTCCTGATGACGGATCTTCAGATGAAGACGAATTACTTACATTCACGATGTATTTACCGCAAGAAGAATCTGTTGGTGACACATCTCTACATGTTAGCCTCAACGACGAGCAGACGGAAGTAGAGAGTGTACCTGAGCATACAGAGGAAGTACAGTCGCAAGGTGACGATGATACACAGCATCAAGGTAACGACAGTACAACGGGAAACAACGATGACGATGCTACACAGAATCAAGATAATGACAGTACAACGGGAAACAACGAAGAAACCATCCAAGGACGTCCGAGGCGGATTCGTAGACAACCGTCAGTTTTCACCTATTTGGCTCCTGGGAACCCAGTGTACCTCAACCCAGTGACTGTATATCCTGATAATGTGTACAACACACAGATACCATATTACTGGCCACCCACGCAAGTTCAACCCACACAGACTTATGGATACAGCGTACCACAGACGTATGGCTACAGCGTACCACAGACGTATGGCTACAGCGTACCACCGACGTATGGATACAGGGGGTCTTTCAAGAAGTACACTGCAAGAAAAGTAATGGCTCTGGTCTCAACAGGAGTTCGACACATCAATTGCCACTCTATCTCCTTCATTTGGATGGATCTAACTGTAGATGTTCAGAAAGAGAAGAAAGAAGAAGATGAGGGTTATAGTGAAGACGAATTCACTCCAGACAACGATCTGCTGAAGAAGAAGCTAGGTGAGGTGACAGCCATTCTGGACATGGATGGTTACATGGTTGATGGTGTGTTCAGATGTAAAGAAATGGGTTGGAAATATTTAAATCACCCTCTGTCTTATTCCTTCCCCTTCTACCATGGGAATGTGTGCGAGTTAAACACAAAGGACCGTTTCTCTGCCAAGTACGTGGAAGAAAACGTTTTTGACATTCCATACGGGGAGTTCTGGATCGATAGAACGGGTCGGTGTTTAAAAGCTCAGTCAATGACAATGGTTGAGGAAGTCGAACGAGGTCAACGTCTGTCTCAAGTGTGCGGTCCACGGGCCAACCGAAGCGTTCGATGTGAAGCTTTAGACTCTCAAGAGTTGGTGTCCGTAAAAAAATCAGTGGTCCAGATTAAAAAGACGGAAGACGGTTCGTGTGCTTTCCACGCCATAGTGGTGGGTCAGTGGATGGTTGAAGGTCGCCCACGTCAAGAGCTTACAGTACGTCAAGAAGAGGAACAAGCCCGAGCCTTGTGCACGCGTTCGGGTCTTCGTTGGGGGGCGTGCGGCCGTGTTGAACTGTTTCGTTTGCAAGAAGTGTTGAAAGAAGAGGGTGTGCGGTTACATGTCTATTACCACGATTTGAACTGCATCGGGTTTGCTGGAGATTTGACCGAGTTTGGTTCTCAGAAACCGACGTGCGACGTGTATTTGTTCCACCACGACGAACATTACGATGTGATCACCACTATGACGGGTTTTTTAAAGAAGAATTATTTCTGCCCCGAGTGTGACGTGGGGTACTCGGAAAAGAGCAAACACAAGTGTCGACCGTTTTGCGAATGCTGTTATGAAACAATCGCCAACTGTTCCCAAGAAGTGGTTCAATGGACTTCCTGCCCCACGTGTCACCGTCATTTCAAGTCGGACGTGTGCTTCACCAACCACAACCGTGTCACTACACACCGAGTACAAGGCCGTCAGGAACGCTGGAGTGTGTGTCAACGGTACCGACGGTGTGTCGACTGTCAGAAAGTAGTAGATTTGCACAAGAAACATCAAGGTCTGCGCGATCTCACTTCTCACCGGTGTGGAGAACAACAATGTATTCACTGTCGTCAATGGGTGTTGTCGGACCACCTATGCCACGTTCAACCGATGGTGATCGACGAGAACGATGAACAAGCTATGGATGTTCCACCCCAAACTTCGTCAGAAGATGGGAGATATACGCAACGCCACCGAAAACGCACACGACGGATGCGTGAATGGGGTTTCAAAGTGGTGGAAATGTGGGAGCATGAATGGGACGGTATGCAAAGTGACGACAACAACGACACATTCCCCCAATGGATGAAACACCGAGAACCGCTAAACCCTCGCGAAGGGTTGTTCGGAGGACGCACCAATGCTCTCAAACTGCATTTTAAATGCCCCGAAGGAAGTCGTGTCGATTACGTGGATTTTACCTCATTGTACCCGTCCGTGATGTTGTCAGGCGGTGCCTACCCTGTCGGCCACCCCACTTTGATCCGACGGGACTTTAAATCACCCCTGACGGAACATTATTATGGGTTCAACAAAGTCAAAGTGCTTCCGCCTCGCCACTTGTACATCCCCCGTCTTGCCGTCACACATTCAAAACAAACTGATGTTTGTGTTGTGCCGTACGTGTGCCGATCAGCTCAGGCAAACGAAAGGGCAATGTTGCCACAATGCCGAAGAACGGGCTTTAGTGGGGACGTGGACCACCCCTGA

Transcript

Actinostola_07156

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03175	DNA_pol_B_2	DNA polymerase type B, organellar and viral	Family	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR004868	Domain	DNA-directed DNA polymerase, family B, mitochondria/virus	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-