Gene detail

Detailed information of Actinostola_07129 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_07129	RETROTRANSPOSON	scaffold803_size210900	153230	189117	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_07129

ATGTATGATCAGTCGGGTCCGATCCATGCAAGATCCTGCAAGAAATTACATGCACCCGCTGGATACTGTTTCATTGAGTTTGGTGAATCGGCGTCAGCACAAAAAGCACTAACAAAGCTCAATGGTTTGCCTGTTGCTGGAAGTAATCCTATAAAAAGATATAAACTAAATTGGGCAACATACGGCAAAGACTTGACAAATTTAGGGTATGGGTTTGTAAGATTCTTTGATGAAAATGAGCACAAAAGGGCTATGACTGAAATGCAAGGAGTCGTTGGTTGTGGAGGGAAAGCAATCCGTGTCAGTGCTGCCACACCAAAGAGCAGACCTCAAGCTACTGTGACCACACCTACATACGGAGCCACGGCCACTCTTTCTAATCAGTACAGTGCTCAGTATGCGCAGCAATGTCAACAGTACCAACAATACGTGCAGGCGTGGCAAAACTATCAGTACCAACAGCCTGCCTATTATCAGCAATATCCACAGTATGCCGCTACACAGATGTATGGTCAGTACGACCAGCAGCATGCCGTAACTCAGGCGCTTCAAAATGAAATCGAAAACAAAAGAAAGGAACTCGACAGGGACGCTAACGTATTACAAAACGCCTTCGACAACGCGCTGCTGGGAAAAGAAGAACACGACGACAACGACTTACGACTCTTACAAGACGCAACAGAGAAATATAAAGAAACTCTTCTACAGCTAACAGAATTGTACCAACACGATAAATGGGGAGACTATGAGGAAGAAGCGAAATTGACGATGGAGTATAGCCGCCTAGAACGCGCACATGGAGTAATAACACAAGCCAGAGACAGCCAAGATCACGACAGAAGGTCACACACATCACGGCAATCTCGCCACTCATCAATTTCCCACTCGTCTTGCCGCTCGTCAGTGACCTCAGCGAGTTCGGCTAGAAGAAGGGCTCTAACGGAAGCCTCGGCAGCAAAGAAACAAGCCGAATTCGACAAACTCATCGCAGAGAAGGAACGAACCCGACGGTTACGAGAAGCAGAAGAGTATCGTAAGAAAGAAGAGCGTCAGGCTCAACACGATCTCGACATGGCGTTACTGACAGCAGACCGTGCCAAAGCCATCGCCGATGCTAGAGTTGAGGCCATAGAAAGCGACGAACAAGAAAAGAGGAATGCTGAAGAGCCATCAACGCCCAAACAAGACCATACCATCGGGCTTCTAGAAAGCTTCACCGCAACAAACCAGCGCCTCGTGTCGTTTAAAGCCATGATCGAGGACGCGGACGTCACGCCCGCTCAAGAAATGAATTATCTGAGGAACTTCACCAACGGTGAAGTTCAAAACGTGAAGGCCGAGTTCGACGAGAAAGACCTCCGCGGGTTACAGACCTTCGCAGACCTGTGTGGAGACAAGGAAATTGTCGCATGGGCGGCAAAGCACCACGACGCCTACCCAGACTTCCACAGGTTCGCCTCCATGGTGCAACAACAAGCCAGTCAAAAGAATCATCCGAACGTCCAAGCCAGCGGAGTCCAACCCCTAAATCAGGGAGAGAAATCGAGTAGGAAAGCCGTAAGAGAAGAGCACACAAGACGAGTCCTGAAGACCAGTAGTGAAGAGAATCGATGGCATGTTGCAAAAGAGTGCAAGGTCGAGGTCACCTGTACTAAGTGCGGCAGCGACCGCCATCCTGCCTTCCTTCATAAAGAGAAGAACGAAGAGGAGCTAAAGTCTAACTGTACTTCCGTATGTCAAAGAGGAGAGCGTCCACACGATCGTCATCGAGTCTACGCAATCATCGATGATCAAAAAAAGTACCTACTGTCAACATGCAGCGGTGAGAAGATGGTCAACTACGGTCGCCGCGTCGCTGGGATAATGATCGACGCCAACGGAAAATCATCCAAATTGCCTACTCTGGTCGAGTGCTCACATATTCCCCGCGACAAAGAGGAGATACCACCCTTAGACAACCAAGCAGACGTTCAGTTACTTATTGGCAGAGACGCGCCCGAGCTGTTAAAGGTCAGAGCCTTTAAGAACGGCCCAAAGGGAGCCCCTTGGGCTCAAAAGCTAGACCTTGGCTGGACCATCACAGCATCTGACAATGAACCCAGCCACTCATTGGAGGACAGAAGAAATCAAGCAGAGAGTCGCCTTACCGGACTCCTGAAAATCCTTAAAAGGAAGCCACAGATGGAGAAAGACTATTTCGAGTTTATGGCAAAGATCTTCGAAAAGGGACACGCAATACCGGCCCCTAATGCGCAGCTGAACCGCCACGAGAACAACGGAAACGTCTGGTACCTGCCACACTTCGGAGTCTACCACCCAAGAAAACCGACCCAGATCCGCGTCGTCTTCGACTCGTCGGCAGAGTTCAAGGGCGTTTCGCTGAACAAAGAGCTTCTAACAGGCCCAGACCTCACCAGCAGCCTATTTGGAGTACTCCTGCGTTTCCGTCACCACAACACAGCGGCGATAAACAACGACCCCCTAGAGGAGATCATCGTGTACCAAATGACAGTGCACCTCTTCGACGACGGTCTAGTGTCACGTGCGACACCAGAGGAGACAATCACCTTGATCAAGAACGCACAAGCGGCGCTAGCCACGGCCAACATACGTCTCCACAAAGTGATTTCGAATTCCGTCGAAGTCATGGAAGCGCTACCAGCAGACGACAGAGCTAAAGACGTCAGAGATCTAGACCTACACAAGCCGTTCACCCGAAGAGGAGTCCTTTCAGTGGTCAACTCCATCTACGACCCCATGGGACTGGCAGTTCCGGTTACTCTGAAAGGCAAGCTCCTCCTCCAGAAACTCGTCAGCATGGGAAAGACACAAAACGGCGACAATCTCGGCTGGGACGATCCGCTACCCGATGATTTAATGCGGCAATGGAAACAATGGAAAGACGCCTTACCGAACCTTCAGAATGCATCACTCCCGCGTTGCCTCCACCCAAGAGATTTTGGCCCAATCACACGAGCCGAAGTTCACGCCTTTTCAGACGCCAGCGAAGACGCAATTGGTTCAAAGGTCGCTCCAACCAAGACAACAAGCATCCCTCGTCTAGAGCTGTGTGGCGCCGTACTCGTCGTACAAGCTGTCAGGAGGATTTTGTCCGAAATCGACCTGGAGATTCATGAAGTTACCTTCTACACGGATTCCAAAGTCGTCCTGGGATATATTCATAACGAAAGCAGGAGATTCTACACCTACGTAGCCAACAGAGTTCAGATCATACGAAGTGTCTCAAAACCCGACCAGTGGAAGTTCGTTGAAACTACCAACAACCCTGCAGATCTTGCTACTCGAGGTATCGACGCAAGCAGACTAAAAGAAACCCAGTGGCTCGAGGGACCAGACTTCCTGAAACAAGCCCACCCGACAGTGTCTGCAGGTGAAGAAGTATCCCTAAACGAGGAAGACCCAGAATTGAGGAAAGTCAACGTCAAGGCCACAAACGTTACTACAGATCTGAGCACGTCTAGGCTTTCCCGGTTTTCTACCTGGGCGTCTCTTCGCCGAGCCGTAGCGACACTGGTAGCAAAGGCAAGAGAGATAAACGGTGGCCGCCACAAAGACCCAGATATGAAACATAGAGACGGTCCTCCACTTCCAACATCAAAGGAACTCGAAAAAGCTACCATAGTCCTCCTAAAGATGGTCCAGACTGAAGTGTTCTCAGGAGAGATCAAGCTACTCAGCACTCTAACGGACCAAGACCACGCCAACCGGGAAAGCGCTAGAAGAAAGAAGAATACACTGAAGAAGTCTTGCCTCTACGGTCTAGACCCCTTCATCGATGAAGATGGCGTTCTACGAGTCGGTGGAAGGCTACGACGCTCGTCACTAGAATTTACAGAGAAACATCCTGCAATCCTCCCTAAAGGTCATCACTTGTCGGAGTTATTGATCCGCCACTATCACGAAACTACCTACCATCAAGGCAGGCAGATCACACACGGAGCTGTGCGTCAAGCGGGATACTGGGTTATCTCAGGACACGGAGCTGTCACAAAGGTCCTCAACGCATGCGTAACTTGTAAGAAATCAAGAGGAATGTTAATGACACAGCATATGGCAGATCTACCGAAAGACCGCACAGAACCAAGTCCACCCTTCACGAACGTAGGAATCGACGTCTTTGGCCCATGGTACGTACGCACCCGCAAACTCCGTGGAGGCGCAGCAAACTCCAAACGTTGGGGACTGGTGCTTACTTGCCTCAGCTCTCGAGCCATCCATATAGAGCTCCTAGAGTCTATGGATGCCAGCTCGTTCATCTGCGCGCTTCGTAGATTCTTCGCCATACGAGGACCTGCCACAAGAATCAAATGTGATAGAGGGACCAACTTTGTCGGCGGCAAGTCAGAACTGGAACAATCCTTGACAGAGACCGATCAACAGAAGATCCAACGGTACTCAACGGAACAAGGCTGCGAGTGGATCTTCAACCCGCCCCATGCTTCGCACTTCGGTGGAGTGTGGGAACGCCAAATCCGCACTATACGGAGCATCTTAGATGCCATGCTTACACAGATCGGAAGTTCTCAACTAACCCACGAACTGCTGTCTACCTTGATGGCAGAGGTAACCGGCATAGTCAACTCTCGGCCCATAGCAGCTGTTCCATCCGACGCAGATGAAGTCCAGCCGCTGTCCCCATCGATGTTGCTCACAGCAAAGGAGCGTCCTCTTACTCCTCCCCCTGGAGACTTCGTCCCAGAAGATCTGTACGCGAGAAGGAGATGGAGAAGAGTCCAATACTTGGCAGACCAGTTTTGGACCAGATGGAAACGAGAGTACTTACAGAACCTACAACGACGTACGAAATGGCAAGAACTCCAACCTAACCTAGCAGTTGGAGACATCGTACTTGTCAAGAACGAGGAAACCCGCCGCAACAACTGGCCCCTCGGCAAAGTCACCAAGGCAATCAGGAGTGAAGACGGAGCAGTAAGGAAAGCAGAGGTCTTCACAACACACGCTGGAAAGGGAGGCAAAACCTTGCTTCGACCCATCAGCCAACTCGTGTTTGTGATGTTTTTGAACAACACAGAGTACCAGTTGTACGATTACCCGCCGAACTCTCTCACGCACAATGACATTTTTTATCCACGAGGGAACTTTTGTACAGCTGGCGATGAAATCCCTGTCCTAACCGACCATCCTCCTCCAGATTTCTTGACACAACACTGGAAAACATGGCTGGCTGACTTTCCACTTGCTAAGTTCATCAGCATAGACGACGGGTTGAAGGATGACAACATCCCAATCGTCACCTGCTCTGCGTTTCAAGGTATTCCAAGGCACAAGCACAGTATCGACCCTGACATCTTGTATAAGCTTCAGCTCAAGAGCTCTATCCCCGAGATAGGGGTCCCATGTCCTCGCCACATGGATGAGAAGAACGTGGAATTCCCATGTGTTGTAAAAGTGGATTTAAGCTATCAAGGATTTGGTACACTCTCCGCGAACAGCAAGGATGAGTTGTCTGCTCTTGTCAAGGAGGTCAGAGAGGAACATGGCTGGAGAGGCAAGATCGTCTACCAAGAGTTGATCCGTGGAGTCAAACAAGTACCAAGTTATACATTTTACTTGAAGAAGTCAGGAGAAGTCGTGTGGATAGGCACAGCAGCGAGTGTGTTTCATGGGTTTCAGTGGAAGTCTTTGACTTGTGACTGGAACAAGCAGGACGAAGAAAGAAACCTCGTATACGGCGAGTTTGTCATCCCCATTAAAGACTACCTTCACAAACACGGCTACTTTGGCATCGCCAACTTTGAACTCGTCGTCAACGACCATGGAAGATACCTTGTGGATCTGAACACACGTCTTCCTGGTGACACCATGCACCAATTGATGGCTCCATACATGGCTGGTATGGGTTTCGCACACTCTATTCTCGAATCAATCAGCCCGACTCGCAAAACATCGGCCCAGAAATTAGTGGAAGATGCAAACCAGCTCAACCAAACAGACAACGGACGAATTGTAGTGGTTTCTGTTGCTGACGTGGGCGATGATGAATGTGAGAATTGGTTGTCAATCTTTGGCAAAACAGGCGAAGATGTGGAAACACTTTTTCGAAAGATAAAGAATTAA

Transcript

Actinostola_07129

Protein

Actinostola_07129

MYDQSGPIHARSCKKLHAPAGYCFIEFGESASAQKALTKLNGLPVAGSNPIKRYKLNWATYGKDLTNLGYGFVRFFDENEHKRAMTEMQGVVGCGGKAIRVSAATPKSRPQATVTTPTYGATATLSNQYSAQYAQQCQQYQQYVQAWQNYQYQQPAYYQQYPQYAATQMYGQYDQQHAVTQALQNEIENKRKELDRDANVLQNAFDNALLGKEEHDDNDLRLLQDATEKYKETLLQLTELYQHDKWGDYEEEAKLTMEYSRLERAHGVITQARDSQDHDRRSHTSRQSRHSSISHSSCRSSVTSASSARRRALTEASAAKKQAEFDKLIAEKERTRRLREAEEYRKKEERQAQHDLDMALLTADRAKAIADARVEAIESDEQEKRNAEEPSTPKQDHTIGLLESFTATNQRLVSFKAMIEDADVTPAQEMNYLRNFTNGEVQNVKAEFDEKDLRGLQTFADLCGDKEIVAWAAKHHDAYPDFHRFASMVQQQASQKNHPNVQASGVQPLNQGEKSSRKAVREEHTRRVLKTSSEENRWHVAKECKVEVTCTKCGSDRHPAFLHKEKNEEELKSNCTSVCQRGERPHDRHRVYAIIDDQKKYLLSTCSGEKMVNYGRRVAGIMIDANGKSSKLPTLVECSHIPRDKEEIPPLDNQADVQLLIGRDAPELLKVRAFKNGPKGAPWAQKLDLGWTITASDNEPSHSLEDRRNQAESRLTGLLKILKRKPQMEKDYFEFMAKIFEKGHAIPAPNAQLNRHENNGNVWYLPHFGVYHPRKPTQIRVVFDSSAEFKGVSLNKELLTGPDLTSSLFGVLLRFRHHNTAAINNDPLEEIIVYQMTVHLFDDGLVSRATPEETITLIKNAQAALATANIRLHKVISNSVEVMEALPADDRAKDVRDLDLHKPFTRRGVLSVVNSIYDPMGLAVPVTLKGKLLLQKLVSMGKTQNGDNLGWDDPLPDDLMRQWKQWKDALPNLQNASLPRCLHPRDFGPITRAEVHAFSDASEDAIGSKVAPTKTTSIPRLELCGAVLVVQAVRRILSEIDLEIHEVTFYTDSKVVLGYIHNESRRFYTYVANRVQIIRSVSKPDQWKFVETTNNPADLATRGIDASRLKETQWLEGPDFLKQAHPTVSAGEEVSLNEEDPELRKVNVKATNVTTDLSTSRLSRFSTWASLRRAVATLVAKAREINGGRHKDPDMKHRDGPPLPTSKELEKATIVLLKMVQTEVFSGEIKLLSTLTDQDHANRESARRKKNTLKKSCLYGLDPFIDEDGVLRVGGRLRRSSLEFTEKHPAILPKGHHLSELLIRHYHETTYHQGRQITHGAVRQAGYWVISGHGAVTKVLNACVTCKKSRGMLMTQHMADLPKDRTEPSPPFTNVGIDVFGPWYVRTRKLRGGAANSKRWGLVLTCLSSRAIHIELLESMDASSFICALRRFFAIRGPATRIKCDRGTNFVGGKSELEQSLTETDQQKIQRYSTEQGCEWIFNPPHASHFGGVWERQIRTIRSILDAMLTQIGSSQLTHELLSTLMAEVTGIVNSRPIAAVPSDADEVQPLSPSMLLTAKERPLTPPPGDFVPEDLYARRRWRRVQYLADQFWTRWKREYLQNLQRRTKWQELQPNLAVGDIVLVKNEETRRNNWPLGKVTKAIRSEDGAVRKAEVFTTHAGKGGKTLLRPISQLVFVMFLNNTEYQLYDYPPNSLTHNDIFYPRGNFCTAGDEIPVLTDHPPPDFLTQHWKTWLADFPLAKFISIDDGLKDDNIPIVTCSAFQGIPRHKHSIDPDILYKLQLKSSIPEIGVPCPRHMDEKNVEFPCVVKVDLSYQGFGTLSANSKDELSALVKEVREEHGWRGKIVYQELIRGVKQVPSYTFYLKKSGEVVWIGTAASVFHGFQWKSLTCDWNKQDEERNLVYGEFVIPIKDYLHKHGYFGIANFELVVNDHGRYLVDLNTRLPGDTMHQLMAPYMAGMGFAHSILESISPTRKTSAQKLVEDANQLNQTDNGRIVVVSVADVGDDECENWLSIFGKTGEDVETLFRKIKN

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF18701	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040676	Domain	Domain of unknown function DUF5641	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-