Gene detail

Detailed information of Actinostola_05766 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_05766	RNA-DEPENDENT RNA POLYMERASE	scaffold572_size275061	167954	177535	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_05766

ATGCTCTCCAAAGTTCACGAACTTGGCTCCGGGAAAAGTTCGCTTTTTAGACAAATCGAGCATATAAAAGGACTCAAAGGTGCCAGCAAAATTCATGATGTCCCTAGGAAGATTTTGAGAAACCACAACGTGCTTGGGAGAGATGCTTTACAAGACAGTGGTTTATTTAGCAGAGTCCAAGAACGTATCATTGATGAGCAGTCGAGGTTGGAATTTGTTTACAGTGGTCGAGGTGACACGATAATATCTGACCACACTGTTATCGACAGTCTTATTCATAGTTCTTTAAGATCAGAACATGATCGTGACAAACGTTGTGCAAGTACAGCTCCAATCCCTGAGCAGTCATTATCGGTTTACAAGAGTTCGCTTGTCGTTCTTCTATCGCCTCTTCTCGAATTTGAAGACGATGGTGTCAGAATGAAGTTATCTCCTGAGGATCGAGAGAAAGCCAAACATCTGTATTTCAACACCTTTCACAAATTTCGCATTCCTTTTCTGTTTCTTGGTTGCGTGGATGTTGAAGACCGTTTCAAGTTAATCCTGGAGGCTTTACAAGGAAATCTTCCTCTTGAGACGTCAAATCTTATCAACTACGGGAAAAACGTGAAACCAATAACCGAGAATCACACAAACTTTTCCTTCTTCTTATCAAGGAGTGGTAAAAGTAACTGCATTAGAGTTCCTACAATCCAGATCTCAGAGCACAAGTACGCGCAAGAGTGGAAGACGTGGGAACCAGGTGAATGTAATAGGTTTATTGAAAGACACGGCGCCGATAAACTGGTCATTCTCGCCTTTGATATGAGCGTTAAATCTACAGTGGTGCAGAAGATGCTGCTTCATGGAGTGACTGTTAATGGAGAACTCTATTCCTTTCTTGGGTGCAGCTCCAGCGGTCTAAAGGAAAGAAAGAGCTTCATGTGGAAAGGTTCACAAAAAGATGCTGATGCAATTATTGCTGAAAATGGTGAGTTTGATGAAAAGTCAGTATCCAAGAGAATGGCCAGGATTTCTCTCTTGTTTTCTGCAATCAAGTTGACGAGCATCTCTGTGTACAAAGAAGAAGTAACGGAAGAGCAAGATTTGTTTGCAGAGAATGGCAAGTGTTTTACCGATGGATGTGGAGGTATCAGCGAAGAACTTTCCAAGCTGTTGTACGGAGAAATATCCAACCCCTTAGAAAGCTCAAACTACCTTCCTGCAGTGTACCAAATCAGATACCAAGGTTACAAAGGGGTCTTAGCTCTAGACCCAAAGCTAGAGGGAAAAGCAATCAAAGTAAGACCATCCATGAAGAAATTTGAAACCTCAGTACATGATCGTATTGGTGTTTGTGGATACTCCAAACCGCATACTTTTGGACATCTCAATAGACAGTTTCTAATGTTATTATCTGGACTAGGAGTACCTAACACAGTTTTTGAAGAAAAACAGCAGTCACATTTTGAAATGGTCAAGACGATGAGTGTTAAGCCTGAAAATGCCATCCAAGTCCTCCAATGGCAGAACAAATTCGAAGTAGCTCAGCGTTTGATGAAACAGGCTGGAAGCGTAAAATCGCCCGGCGATGATGAATACATGCGAAAAGTACAAAGATGCATCCATTCAGTTCAATCGAAACTTGTTTCTGAATCTGGAAGGCTTCGCATTTTGATCCCAGAGTCCCGAAACATCTATGGGGTTTGTGACCAAACTGGTTGCCTCGAATACGGAGAATGTTTTCTTCGTATCACCGATGCTAATGTTGGGTATCCAAAGACCATAAAGGGACAAGTGGTAGTCTGTAAAAATCCGTGTTACCTGCTTGGCGATGTAAGAGTCTTAAAAGCTGTAGATGATACTGATAAACCTGCAACAAGGGATCTGAACCACTTGGTTGACTGCATCGTGTTCCCTGTTTGTGGAAAGAGACCTCATCCTGATGAAATAGCTGGTTCTGATCTTGATGGAGACATGTTCTTTGTGACGTGGGATTCTGACCTCATACCACCTGCCATGAATCCACCATACGACTATCCAGGAGCAGTGAGCAAACCGCAAGGACGAATAACACTCGAGAAGACTCTAAAGTATTTCGCATTGCAAAATGAAACACAGAAATTGACCGGCAAAGTGGATAAATACTTCAGACAGTGGGCCAATGCAAAAGGTGTAGAGTCAGACGAATGTGCACGTTTAGGAATGCTGTTTTCAAGAGTAATTGATTCGGCCAAATCAGGAGAGAAATTCAATTCCAAAGATTTGCCAATTCCACCAGATGTTTCTGATCAAAAGTTCATCTGGCAAGTGTTAGAGAAAAGAGCAGAAGAATTCGTAGAAGATTTCAACAAGCGCGTTCTCAAAAACGAAACAGGTTTCCCGAATCCCTTCGACGTAGATGAAGAGTTTGTTGAGTCAGTTGTCAGGCAAGAAATGTCAAACATCAGTGAATTTGCAAAGTTTCAATTTGCTTGGAGCTACGTTCAAAATCACTGTAAGGATACAGAAAAGATAGCTACCATCTTTGTCAGTAAATACACAGATCACATTAACTTTGCTCTGTTCTCATCAGAGCAAAAACGCGAGGCTGTTGAACTTGGCATTCCAGCCGGGATCATTATCAATGCGTTGAACAAGTCTCGATTACTTGGTAAAGATGACATCGAAGAGTTCAGTATGCATTCTCCGCCAAATTCTTGGAAGTTTTACTTCAGGGCAGATCACGAAACGTTTGAATGGCCGTATCTTCTCAAAGCACTTACAAAGCATGAACAGTGCCTTCTGGTGCTAAGGCTTCCTGACCAGGTCACTATAGCCTTGCAGTTTCTAAAGACCTGCCAAATGGGCGAAGAGCAACGAGTGGACTCTGGAACTATCTCAGGATATTTCTACTCTGGAAATTTTGGATATCGTAAAAAGTATATCCTGGGAAGTAATTACACATTGGACTTAACTACTGACGTATTGCAGCTCTATCGCCATGAAAAGAACCAGACCTTTGTGTGTCTGAAAGCAACTGATTATTCCACTAGGTCCAAATCTCAGCTGGGTGATGAGAATTTGTTTCCCATCAGTGTGGACCTGTTAAGGTTTGAAAGAAGAATTTTCAGTGGACCAAGACGCCATCCTCTACTGAACAAGATACCCTTTGTTAGAATCGAGGTGTTTGTCGAAAATAAGGGTGGAAGTGTCCCTTACTTTGATACATTCCAAACCAATGGCAACGAGTTAATTACAGAAACAGAAAATCTTGAAGAAGAACATGCCAATGATGTTCAAAGAGACTTCTCTTGTTTGCTCAGCGACAAAGAACTCGATGTCCAAGTGTGCGAAACTGAAGACTATTTCAAGACAGCACTCCGTGGTACTGTTACAGCCGGTCAACCGATCTTGTTTCATAACATTATGAGCAGCTGGCTTCAGAAATACAATGCCTTACCTTCCTTTGTCCCAGACTTGTTTATTGCACTTCTGGAAAATATGGTAGTCATAACAGCACCCTTGATGGAACAGCTTCCAGAACCTGTAACTGAAGCTGTCAGGAATGCCATACTAGCTCAAAGTTTCCAGGACCCATCCCAACTGTTCAAACTCGCTGGATTTCTTTTTAGGTTACACCTCGAAGATCTAGCTGCCAGTCTTATAGTGCGGGACATTGGAGATTATGGCTTGACTGTCACCTCGTTCCTTGGTATATTTGGCGACTGGCAAACGTGGTGGTTTGTGACCCCTGACATTGCCAAACAGAGTATCTGCAATGCCGCACGAGTTGCCTCGGAGTGTGTCTCACCAGACGAGAAACCATTACAAATGCTCAATTATGTCTTGCATTTGGGACAGCTTCACTTTCAAGATCTTTTACAGGACATTGAAGCTGTCCAAGAAAGAATGAATGGCGCAAAAGCTGACTTCAGCATATCAAATCTGAAGCTGGAAATTCCTTCAGATGGCAAATTTGAGATCGTGTCATTCATTCGCGCAGCTGCACTCCATCACCGTCCACGAATTACTCAAGGACAACTTGTGGCCATAACAAGACAGGTCGACTTCAGGAGGACTCCGAATCACGAGTCGTGCTGTTGCCTTGCTCAGGTGAAAACCATAAGAATCGCTCCACTTACAATCAATGTCAAGCTGTTTGGTAAAGTGCCTATGACTTTGACTGAAAGCTCAGGAAAGTCACGATTGTGGAAAATGGATTTGATTGCAAATATCACCACCTTCACACGAGTTATGGATGCTTTGAAAAAGCTGGCGACAGCTGAACGTGACTTGCCATCTTTACTCAGTGTGGTAACAAACCCAAGATGCATTCCTCCAAGTTCATCGCTGCTTCACAGCGATCCGTCAGATCTACCAGAAAAAGACACACTCAATCTTCCAGAATTGACAATGGCAGATAATCTAAATCCCAAGCAGAAAGAAGCAGTACGTGCAGCTCTTGGACAGACGGTAACCCTAATTGAAGGACCCCCCGGAACTGGAAAAACTACAGTGGCTTGTGAGATTATCAAACAAGTGAACAATTTGAAGAAGAGTAACGGTATATTAGTTGTAGCTGAGACAAATATAGCAGTTGACAACATTGTGAAAAAGTTAAGAAACGATCTGCCTTTTGACCTTCTTAGAATTGGTACGGAAGAAGGAGTCGACAGAGAGGTGTATGATTTAACGCTAGAAGGACAATTGATGAAACTGGAAGAGACTGAAGGCAAGAAAACGTCCTATCGTGATGACCAAGGAATGATTCACAGAAGGAAAAACGCAGTAAAGAGCATCTTTAAGAACACAACTGTTGTCCTGACAACGTGCGCTGGTGCTGGTGACCCTGTTCTTGAACCTTATGCTTTTGAATTTGTATTGGTAGATGAAGCCACGCAGACAAAAGAAACGACTTTATTATGCAGCCTCATGCATGGTGCCAAACAACTTATTATGATTGGGGACCCCAAACAGCTTGGTCCAATTGTGCCACATGGGCACCAAGTCCCATGCTTCTCAGATCTTCCTGATGTCACGTCACTGTCCAAGACATTATTTCACAGACTTTACGATATCATGCCAAGTACGCTGTTGAACTCTCAACACCGGATGCATCCGGAATTGGTGCGATTTCCATCGGAAGAGTTCTACGGAGGTCAACTCATTTCTGGTATTTCAAAGGAAAGTCGATGTCCCCCACTTTTCCCATGGCCAGACCAAGAGAAGCCTTTCTGCTTCATTGATGTTGAAAGCAGGGAAGAAAGATTCGGGACGTCATTTTGCAACAACCAAGAAATAAAGGTTGTTCAGCAGGTGTTGGATATGCTTCTTGATATTCCAGAAGACAAAATGGAACACCGTCTCTCTATCACCGACATCGCCATTTTGACTCTTTACCAAAGTCAAGCTAAGCTGCTCAGCTGTCAAATAAAGCCCAAAGTTGAAGTTCGGTCAATAGACGGTTTTCAAGGTCGGGAGAAAGAGGTTATTATTGTGAGCACTGTAAGGTCAAATCCTCAAGGATCGTTAGGATTCGCAGACAGTGCTAACAGACTGAACGTACTTCTCACACGTGCAAAACGAGGTCTCATAGTTGTTGGCAACTTAAAGACCTTCAGTAAATCAGATCTTTGGAACAAATGGCTTCAGGCGGCGCCAATGTTGGATGTAAAAGCGACGGAGGTATTGCGCAACGGTGGTGCTCAAGGATACAGTGTCCCTACAAGACGAAAAGAAGCGACAAGCAGGAATCGTGGATCCGGAGCAACTGGTGGAGACCAACGAGATTCAGCTTTCAAAGAACACCGCTGCTTCTGA

Transcript

Actinostola_05766

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05183	RdRP	RNA dependent RNA polymerase	Family	Interproscan
PF13086	AAA_11	AAA domain	Domain	Interproscan
PF13087	AAA_12	AAA domain	Domain	Interproscan
PF13521	AAA_28	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007855	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038727	Domain	NadR/Ttd14, AAA domain	Interproscan
IPR041677	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR041679	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR047187	Domain	Upf1-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003968	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0030422	Biological Process	siRNA processing	Interproscan
GO:0031380	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-