Gene detail

Detailed information of Actinostola_05751 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_05751	ATP-BINDING CASSETTE SUB-FAMILY C	scaffold56_size818591	521154	606809	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_05751

ATGGATAAAATAGGTGGACAGATCTACGTGTCGAGCTTGGATAATGGGTTCGGCCTCGCAGCACAGGAACCATGGATCCAACACGCGACCGTCAAAGAAAACATCTTATTCGGCCAACCGTTTGACGTGGACAAATACAGCGCCGTCGTTGATGCTTGCGCTTTGGAAGAGGATTTGCTCATGTTGCCTGCTGGTGACGAGACGGAGGTAGGAGAGAATGGCGTGACGCTTAGTGGAGGCCAAAAGGCAAGAGTTGCATTGGCGAGAGCAGTATATCAGGACAAAGATGTCTATTTACTGGATGATCCGCTGGCCGCAGTCGATGCACACGTGGCGGCTCACCTATTCCAGCACTGCATTCTGGGACTTCTACGTGAGAAGACCGTCATCCTTTGCACGCATCACACCAAGTACCTCAAAGCCGCTGACCACGTCATCGTCATGCAAAACGGTAGAATCATCCACCAAGGACTACCGTCAGAGATACTTTCCAAAGAGACATTGATGTCACAGATATCACGTGACTTTAAAGACGTTGACGATGACTCTGACCTTGACCTTGAGACTGAGCCTGAAGAGAACACAACAAAGAACGTCGAAGAAGACGGTGGACTGGTGTCTGAGGAGGAGAAAGATGAGGGCGCGGTCAAGTTGCACGTGTATGGGTCATACTGGCTTTCTTTTGGACATTGCCTAGCAATCAGTATTCTGTTGTCTCTTCTGCTGATGCAAGCATCGCGTAATCTGAGTGACTGGTGGCTGGCGTACTGGATATCTCACTCGAAAACACGGAACGATCGCAATATCACGATCGCTTCACGCGGTTCAGCGATCAGCTATTCTTCACCCATAACGAACTACACGTCGCACGGCATCCACATAGTGAAGAATTCGGTGACTTTTTATCTTATAGTTTATGCAGGATTTGCTGTCAGTAATACGATTTTTACCCTTTTTCGTGCCTTTCTTTTCGCTTATGGAGGAGTCAAAGCTGCTCGGGTTCTCCACCAACGATTACTCGCCACTATCTTGGCAGCTCCTGTATCGTTCTTTGATGCAACTCCGATTGGTCGAATTGTTAACAGATTCTCCTCTGATATGTACTCCATCGACGACAGCCTTCCTTTCATTCTCAATATATTCTTAGCTCAAGCGTATGGAGTAGCAGGGACGATAGCCATAACATGCTACGGTCTGCCATGGTTCGCTGTGTTACTGTTACCACTGGTGCTAATATACTACTACATTCAGAACTACTATCGTAGAACCTCAAGAACTACTACCGTAGAACCTCAAGCAATGGCGGCGGCGCAGTGGTTGAACCTGCGATTGCAGTTCCTTGGTGTTGCCATGGTGACAGGAGTGGCTTTCATTGCTGTTTTGGAGCATCATTTCGGTACTGTTGATCCAGGTTTGGTTGGGCTGGCAATCTCTTATGCGTTGTCCGTGACGGACCGTCTCTCAGGCATGGTGACGTCATTCACTGAGACCGAGAAACAAATGGTCAGCGTCGAGCGTGCTGTTCAGTATATCGAGGACATACCATCAGAACAATCAGGAAATACCAAGATAGGGATAGTAGGTCGTACTGGTTCTGGCAAGTCCAGTCTTTTCCTGGTGCTGTTTCGAATGGTTAAGATCCAAGAAGGTGTTGTGATAGTTGATGGTGTTGTCGTGGCTTCTCTTCCTCTCGAGGCGTTCAGGTCTCGTTTAGCCATCATTCCGCAAGACCCGTTTCTGTTCAGTGGATCTGTCCGCTCCAACATGGATCCGTGGTCACAGTATTCCGATGCTGATCTGTGGACCATGCTACAACGATGTCACATGAACACGGCCGTGAGAGACCTGGGTGGTCTGGACGCTGACGTTGGGGAACGTGGCCGGAATTTCTCAGTTGGTCAGCGTCAGTTAATTTGTCTTGCTAGAGCTCTGTTATCACGAGCAAAGAGAAAATCAGCTAAAGGGAAAGAAAAGAAGCTAAAGAGAAAAGAGGAAATAGCAAAGATCAATGCATCACAAGCTGTTGTGGATGCTGCTAATGATGTTGTAGATCCTTTTAAACCATTTGCAGCTTTCAAAAAATATACTCGCAATGGACTTGATCTTCATTTGAATTGCCAAAGAGTTACAAAAATGAGTGTTGATGAAGTGCAATGGGCTTTTGATCTCACCAAATGCAACATGGAAGCTCTTTATGAGGAAAGCGACTGGGGCTGGAATGACAAGAAAAAGATGGAAGAAATGAGTGAAGACAAAGCCTGGTACTTGATAGTTAAGGAGAATGGAGGTCAGGCAGTTGCCCTCTCACACTTCAGATTCGACTTAGATGAGAATATGGAAGAAGTTTTATACTGTTACGAAGTCCAAGTTGACCCAGCTCTACATCACAAAGGACTTGGCAAGTTCCTAATGCAGATCTTAGAGCTGATTGGACACAAAGCACAAATGAAAAAAGTCGTATTGACAGTTTTTACAGATAACAACGTTGCTGTCAACTTCTTCAAAAATTGCCTAAATGGTTCTCTCTCTGTCAATCAACCAAGTTCCAATGCCCATAATCCTATCAACAAAGATGTAGACGCCCACGAACGTGTAGACACTCATGGAACAAGCTCATCCACTAATAGTAACATCGTTACCACTCAACTGATAGATATCGTCAAGAATTTAGTGGAAAATCAAAACTACAGTAAATTGCCTTCTCCTGAACCAGGAATCTTCTCTGGGGATTTATTACACTACCCAATCTGGATCCAAGCCTTTGAAACACTTATCGAGAACAAGACAACGAGACCCAACGAAAGAATCCACTTCCTGAGAAAGTACGTAGCTGGAGAAGCAAAGGAAGCGATCGATGGTCTACTGCTCCTAAAATGTGATGACGCTTACCAAAAGGCTAAAGAAATGCTTTCCAAGCGTTTCGGAGATCCGTTTGCTATCGCCACTGCCTATCGTCAAAAGCTTGAATCTTGGCCCAAGATCCAAAATAGTGATGTTAAGGGTCTTCGCAAGTTTACTGATTTCTTAGCACACTGTGAGAAAGCTATGGATGGAATTAGCAGTCTACGAGTCCTCGATGACGATCAAGAAAATCGTAAAATGGCAGCAAAGCTTCCTAAGTGGATTACAAATCGATGGGCCAGAGAAGTCTACCAATACAAAGAAGAAATTGGGATGTTCCCGTCCTTCAAGAAATTTGTAAAATTCCTGATCAAAGAATCTGATATTGCAAACGACCCAGTCTTCTCAGCACAGAACCAAGAACTCCCATTGTCCAATAAACCAAAGGATACACTAAAACCATTCAAAGTCGCAACTCAAAGAAATCAGATCCCTCGTCCAGAAGCAGCAAGGCAGTGGACTCACACCGAACGTATTGCAGAAAAACTTAATATGCCGTATAGAGAATATATCGACGTTGGACTACTGATCGGCCTAGATTGTACTCGCGCCCTCATCCCTCGTGAAGTGATTGCAGGTGATGGCAATAATCCCTATGCTTTAAAGACAGATCTTGGCTGGGGAATAATTGGCAAGTACAATGACGCTGCTAGTGACAACGATGAGGAAGATAATATTGGCGTATCACATCGAATTATATCCTGTGAAGTGACGAATCCTCAAGCTTCCTGTTACCTTTCTCGCAGGACCAAAACAAAAGAAGTCCTCAATCCTCTCCAAATGGAGAATGGTATTGTTCAAAGATCCGACGGCCATTACCAAATGCCACTTCCCTTTCGTGAAGAGATTCCTAACCTCCCTAACAACAAGGCTTTGGCTTCTCATCATCGTCTACAGAAATTACAGCAGCGAATGGCTCATGATGACAAGTATTACAGTATGTACAAGGCAGCTATGGACGAAGTCATCGAGAAGGGTTATGCTGAGAAAGTTCCCGTGTCCAAAAAGGTGACAGAAGACGGAAAGGTTTGGTACATTCCCCATCATGGAGTATTCCATCCAAAAAAGCCAGAGAAACTCAGAGTTGTCTACGACTGTAGCGCAAGATACAAAGGAGAATCCCTGAATGAGCACTTACTTGCTGGTCCAGATCTTACAAATAATCTAGTTGGTGTTTTATGTCGCTTCAGACAAGAGCCCTTCGCCTTCATAGGAGATATAGAAGGAATGTTTCATCAATTCAAAGTTGAAGAAGAACACAGAGACTTTCTAAGATTTCTTTGGTGGGATAACGGAAATCTTCAAGGAACTCCAGATGAATATCGTATGACAGTACATCTGTTTGGCGCTAAATCATCTCCTGGATGCTCTAACTATGGTCTCAAGAAGATTGCAGATGACTACGAAGACGAATTTGGTTCTAAAGTTGCAGACTTCATTCGCAATGATTTTTATGTGGACGATGGTCTAAAATCACTTCCTACAGAAGAACAGGCTATCTCAGTGGGTGACCAAACCATTATCGAAGGTCTTTGCCACAGGGCCGGCTGGATGGTGACCATCGGTACGAGTGGTGACGGATGGTACCACGGTGCATCTCATTATCCGTTGGTGTCCGATGGTGAAATTGGTGATTTGGTCACCCTGTGGCATATCGCATATATTACAAGACTTTGCCACAGGTCCGGCTGGATGGTCACCATCGATTTCTCATATGACGTGAAACATCCAGTCATCCTACCCAGAAAGGGTCATGTTACAGAGTTGCTCATCACGTTCCACCACGAAAGAATCAAGCATCAAGGACGTGGTATAACCCTTAACGAATTACGCTCCAGTGGATATTGGATCATCGGTGGAAGCTCTGCTGTGGGAAGATACATCACCAACTGTGTTACATGTAGCAAATTACGCAGCAAGACTGAAGACCAAAAGATGGCGGATTTACCGAATGACAGACTTCAACCTGCACCCCCGTTCACCTTCTGTGCTGTGGATTATTTTGGCCCGTGGTATATCAAGGAAGGACGCAAGGAACTCAAGCGTTATGGAGTATTGTTCACCTGCATGGCCTGCCGAGCGATTCATCTTGAAACGGCTAACTCTCTTGATACATCCTCATTCATCAATGCACTACGTCGATTTATCAGCAGACGAGGCCCCATTAGACAGCTGAGATCTGACAGAGGAACCAATTTCGTGGGTGCTAAGAAAGAACTTCAGGAAGCTGTGGCGCAACTGGATCAGACGAAGATTCAAGAATTCCTGTTAAAAAGAAACTGCGACTGGTTTAAATTTGAGATGAATGTGACATCTTCAAGTCATATGGGCGGTTCATGGGAAAGGCAGATCAGAACGGTTCGTAGTGTGCTATCTGCCCTATTAGAAGAAAATGGACGACAACTAGATGACGAATCTCTTAGAACCCTCATGTGTGAGACAGAGTCTGTGGTGAATAGTCGTCCTCTTTCAGTCGAGAACCTGAATTCACCAAATGGTCCTGAACCACTGACTCCTAACCACTTACTGACCATTCTTGAGTTCACGCTTCTAACTTTAGAGAACACAGATGGATCGCGAAGAATTACGTATGTGCCTCCTATGCATTATGGTTTCAACCGAAGCAATTCGTGCACTAATACTGGTACCACCACCTGTAGCTATCATGGGGCCCATTGA

Transcript

Actinostola_05751

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00583	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF03564	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182	Domain	GNAT domain	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR005312	Family	Protein of unknown function DUF1759	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR016181	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050173	Family	ATP-binding cassette transporter C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24223	ATP-BINDING CASSETTE SUB-FAMILY C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-