Gene detail

Detailed information of Actinostola_05281 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_05281	SOX TRANSCRIPTION FACTOR	scaffold49_size874527	753547	797384	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_05281

ATGCGTCCACCAGCGACTCCTTTTACCTCTTTAGATACCTTCATGGCTGCTCACAGTCCTAGACGATTTTGCCAAGCTAGACAGAGATATTTACTAAAACCCCTTGGATTCGACAAGAGGATAACTGCTGAGACAGGGTTTGAACCCATCGATAAGAAAGAAGAGCGACCTATATCAAGATGGAAAACTAAAGCAACTCTTAATTTAAAAGAAGCCGTGATGATGATGGTGTTTCAGCAAGGCAGCGACCAGTTTCGCGCTTCGCCAAGTCCCCCCCAAACAAGTCCGATCCCAACGTCTCTAGATGATCAAACAGAAAGTGGATCCGAGAGCAAGAAGAAGAGTGACCTACAACACGTCAAACGTCCAATGAATGCATTTATGGTATGGAGTCAGATCGAGCGCAGGAAGATGGCCGAGGAGCACCCCGACATGCATAACGCAGAAATCAGCAAGCGGTTGGGTAAGCGATGGAAACTACTATCAGAAACAGAAAAAAGACCGTTCATCGAGGAATCAGAGAGACTCAGAATACGACACATGCAAGCCTACCCAGATTATAAGTACCGTCCACGCAAGAAGAAGCAGCCCGCTAAAGCAAAACCAGGATCAACAGAGGGTAAACCCGCAAACTGCACCAATACATCTGATACTACTGTAATCCCTCGTAAAACTATCCACGGAACGAAGCGAGAAGCTCTCCCTGAATCGCACACAACCTACCATACATTATCGTCAAATAAGAAGTATAATTCCAATGGTGAGCCTACGTTTAAAAAACAGCGCCGTGATTTAGTATCACCCATCACGCCGCCTCCAAACGTCCCCGACTCCATCGGCGTCACACCAGAAGATCCGATTGATCAACTGTCGTTATACGAAGACTTTGAACAAGCGTTCAAGACCGAGCAACATCAATCACACCTCACATCCAACATGGCAACCCATCAAGTTGCGATAAAAGTTATTGACACACGAAAAATCACCGATGAGTATGTGAAGAGAAATATCCTACGTGAAGCTCTGATACTCAAGAAAGTTCAACACCCAAATGTAGTGAAACTTTACGAGACTTTGAAACAGAGAGATTTTGGCCTTAGTAATGTCTGTAAGAATGGAGAACCACTCAAGACACAGTGTGGCTCGCCTGAATACGCAGCACCTGAACTCTTTAAAAAGGATTGTCGCTATGGCGCTGAGGTTGACTTGTGGAGTTTGGGGGTCATTACATTTGGAATGGTGGTTGAATGTAGGGACTTTCTCAGAAAGCTTCTAGAACCCAATCCCTACATCCGCCTGCCCCTTCAAGAGGTGATGGTCCACCCCTGGATAACCATGAAAGGCGTGTGTCCCTTGTTACCTTACGCGTCACCAGAAATAGATCAAAAGATCGTTGATAAGGTTCTGGACAGAGTATCGGAACTCATTAAAATGCCTAAATCGAAACTGGAGGTTCACGTGGCTCGTAGCCGACACGACACTATATCTGGTATTTATCATTTGACGTTAGACGAGTATCTTGAACGACATAATGAAAGTGTAAAAGCCATCAACAAAGACAGGAAAATGTCAAATCCAGGAGGAGTTGATGCCTCAGTTCCTCAGAGCAAAGGAACAACCGGTAACCATAGCAACGCTAACAATAGAAAGCTTTATACCCAATCTGCTAAAACAGAGACCAACAGGCTGATAGTAAACACCGTGCAAAGACTGGGTATGAGTGAAAAAGACTTGGCGAAGAATGGCGATGGCGAAGGCAAATTATCTGACAGTATGATGAATATTTATCAACGTTACCTTTCCAACTGCAAACCGCATCACAGACGATTGTCTATAATGCAGGCTCATGAAATCATTCAACGCGAACACACATTCCAGGCCAAATATGGAAGGAAAAATGATTCAGACTTGGAAGAGAAAGATACGGATGAACAACAAGCCGACCCGGATGTGATGTCATCAGTCAAGGTAGTACGCAGAGAGAAGAAGCCTCAGTATTCCATCAAGACTTCAAATTTAGCGTCGTCGACTTTGCAAGAGGATCAAAAAGACCTTCTTATACACGCAGCTCATTGCAGTTGGTTCAAAAACGATATTTTAGAGAGTGGACTTCTAACTAAGGACAAGCAATCTAAAGTACATTATAACATAGCCAACAGAACACAAGAACCAAGCAGAGGAGGAAGAATCGTGAATCAAGAAAAAGACGAAAAGCAGCGGAGCGCACAGGAATACTCACTCCGACGCCAAAAGCAAAAAGAACTGTTCGACGAAGTAGAACTGGAACATTCACGCATCGAACGCGAACTACAAGATACAGAGCGAGTGAAGTTAATCGAACAATACTTAGACGATGTTTATACGCGTTACGGCGCCAGCACCAAGACTTTACAACTAGACGTTACTTCACGCTGCAAGACCACGCCTAAACGTCAAGGTAACATCTACTCCTGGTTACCTAGGAAACAAGCACGTGACAACAGCAAGCCAGCCTCGATACTGCATCCCTTCAAGGAATCCACTAACAACTTCAGTATAGGTTGCGTTGATAAGAAGATTGAGTTCAAAGAAAAGCAGGCAAAGAATGATGCAAAGTTCAGGTTTTTCAACGATTGGAGTAAAACTGCTTTTATTAATTACGTAAATAGTGACGGAGAGTTTCTGATGAACGAAGCCGACCAGGATTTTTCAAGCCAGATCTAG

Transcript

Actinostola_05281

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR050140	Family	SRY-related HMG-box transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270	SOX TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-