Gene detail

Detailed information of Actinostola_03975 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_03975	ATP-BINDING CASSETTE SUB-FAMILY C	scaffold345_size386157	52397	111740	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_03975

ATGATCAACCAAGGGTTGTATATTGATGGTTTAGTTGACGGAGATATCATGACATCTGAACAGATGATAAATAGCGAAGCCCAAAGTAAAGTTAAAGATCAGCCTGAAAAGAGAAATGCTATACGATTTTATCGGTATCTTTGGATAGATAAAATCATCCCTTATGAAATCCATTCATCAGTACACGACATCGTGTCCTTAATCAAGGACGCATTCAAGTTTCTCAGTAGAAATACCTGTTTAAAATTCGTTCCAAGAACCACTCAGACGACATGGATCAAATTCATCAGGAGAGTAGGCTGTTGGTCATATGTCGGACGTCGGTACAAAACAGGAGGTCCTCAAGAAATATCACTTGGTGATAGCTGTAAACTACAGCCAATCGTCCTGCACGAGTTAATGCATGCCTTGGGATTTCTTCACGAGCACCAGCGACCTGATAGAGAAAAGCATGTGGTAGTATATTGGGAAAACATTGTATCAGGGCGCTTGGTAAGGTATTTCGAACCCTATTCAGCTGACCTGGTAGATTCTTTAGGCGTAGACTACGACTACCATTCAACCATGCACTATTTTGCTAGAGACTTTTCAAAGAATAACAAATACACCATGACAGCAATAGACGATCCTCTTAACAATAAACTTATCGGACCGAACGCTTGGCCATGGGGATTAACAGCACGGGATATTGACAAAGTTAATGCTCTCTACTCGTGCAGTCCTAGAATCGTAGGATACTCTTTTGACAATGCGGACATTGCGATTGACGATATTAGCTTGCTATGGGGACCATGTGGAAATTCATCTCAGATCAATCCACTACCACACATCACATCGTCATTAATTACAACCGAAGATACTTGCCACTTTGAGTCTGGATTCGACAACTGGCAAAATGCTAAAACAGACAGACAGTTTGATTGGGTTCGCCACAAAGGAGAAACGCCTATGGATTATACAGGACCGAGTGGTGATCATACTAGCAGAACAGGTTACTATGCTTATATTTCAACCTTGTCTCCGCGGACCATTGGACAGCGGGCTCGTCTAGTAAGCAAGACGTATTCCAAACAATTTCAATGTATGTCGTTCTGGTATAATATGAATGGTGACGACGTGTGGCAGTTGAACGTGTATAAAAACTCTTCAAAAGAAGTTCTCGTGTGGTCTGCATCCAAGAACAAAGGTGATAAGTGGTTTCATGGAATAATATCTCTTGCTGGTTCACAGCCATACAATATCATCATCGAAGGTGTCAGAGGTCACGGAGAAAAGGGAGACATCGCTATCGACGATCTTGTCGTAGGAAGACAAAAGTGTGACATCTCTAGTCGATGTTTTACATTCAAGTACCACATGCACGGATCTGACGTCCGCAAGCTAACAGTCTACAGAGAATACCTGGACTCATCTAAACGGATAGCAATCTTTACAAAGACAGGCAACCAAGGGGACAAGTGGAAACCTGCTGCTGTCAATGTTATACAACAAACAATAGCAATGAATGGAACACGAATGTTTAGGGGCAAACAGCTACATCGCGATCGAGAGAGTCCGCTATATCGTTTCCGTTCTTCGCAAGTTTTTGTGGGCAAACTTTTTGCTGAGTATAGAATCAAACACGCTGCAGCAACGGATAAGCGCCTTACAGCCATGAACGAGATTATCGCGGGAATACGAGCCGTGAAGATGTACGCTTGGGAATGGAACTACAGGGACATCGTCAAATCTCTAAGAAGTCTCCAAAATTTGCACACAAGAGCGTTCTCTTTGGTAGTGTCCACTTCTCGATGGGTTGGTCTATACAGTGATGGGATTTGTGCTTTATTTGTCACTGCGGTAGCTGTTGCCACGGTATATCTTCCCATAGACTCAGCAACCGCTGGCTTCATTTTGGCCCACGTCATTTCTATCGTGAGGCTGACATCAAAAGCGATGCGTCATTGCTCTGAAGTGGAAACTCAGATGGTATCAGTGGAGCGAGTTAGAACATACACCACGTTATCTGCAGAGCCAGGTTACGAAAGACAGGAGAAACCTCCTCAGGACTGGCCAGATCAAGGTGCTTTGAGTTTGCAAGGGATGTCCATGGTGTACTTAGGGGGTGGCGCCTGTGTCTTGAAGGACATCACATTTGAAGTCAAACCCAAAGAAAAGGTGGGCATCGCAGGACGAACTGGGGCTGGCAAATCATCCCTGGTAGCTGCCTTGTTCCGTATGCCGGACCCCCAAGGACACGTACTCATTGATGGAATAGATCTCGGTACCTTGAATGTCCAAGCAGCTCGCAGGTCGATGGCCGTCATTTCGCAGAATCCTGTCTTATTCAGTGGAACTCTCAAGCACAATCTCGATCCTTTTCATCGCTTTACTGAAGAACAGATCTGGATAGCGCTAACGGAGGTGCAAATGAAAACCAGAGTCAGTAAACTGGATGGTCTTCTCGAATATCGCATCGGTGAAAATGGATCAGGTTTTAGTGTTGGCGAAACGCAGTTACTGTGTCTTGCTCGAGCACTGCTTCAACGATGTAAAATCGTGGTCCTGGATGAAGCAACAGCCAACGTGGATTACAAGACCGACCAACTGGTTCAACAAGTTATCAGGGAAAAGTTTGGCAATTGTACCGTCCTTACCATAGCACATCGACTAAACACCATCATGGACTACGATAGGGTACTGGTACTTGACCGCGGTCACGTGGTAGAATACGATAGTCCAACTATCCTTGCTGCTAATAGTGACGGCGTTTTTGCGCAGTTGTTGAAGACATCGGACATGACTGTTCACACCAAATCAGATGATTAA

Transcript

Actinostola_03975

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00629	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF01400	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000998	Domain	MAM domain	Interproscan
IPR001506	Domain	Peptidase M12A	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR034035	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR050173	Family	ATP-binding cassette transporter C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24223	ATP-BINDING CASSETTE SUB-FAMILY C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-