Gene detail

Detailed information of Actinostola_03904 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_03904	PROTEIN CBG26694	scaffold338_size389221	29898	101485	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_03904

ATGCCCGTGTTATTCTCCGGTTCCAACATGGACGAAGAGCTTGTTCGAATTCTGCACATGTGCGAATTGGAGGAATTGAAGGCAATACTATCGAGTCACAAGGTACACAGTATCAATGCTATGAAAATGGTGACTGATGAGCAGTTTTCAGCTATGGGCGTGGCAGTAGGTCATGCTGCCACGATACGGGCTATGATTTCTGAAGGGACAAGTGATGATTCATTAGTTGATGAAAGCAGTCGCAATGACCAAACCGGAGAAGATGAGGCCATGGTATTGGACGGTACCTCACAGCCGCCAAACAGTGATCTTAATCCTAACTCAGCGTTCGATGATGCCAATGAATGCCTTGATCGTGATGAAGCCGCAAAAGATGTCCCCTCGCCAACTTTGGGTGTCGCCAAAGTTGGTGAAGAATACTCAACCGTAGACTTTTGCGAACATACTCTCAACATACAGTATGAAAATCATAAAGAGTCGTCTTATTCTGAAGTGATAATAAGAACGGTGTCCTCTTCAATAGCCCAGTGTTACGACCATAATAGTTTCGAAAATCCATTCATCAGAGAAACAGCAGTAGATGATTATGACCCACTCGACAACGGCTACACGGTCTCTGGCATATCAAACGGACATGCCTCTTTTCTTCAAGAGGTCTTCAACCCGACAAACGACGACCCTAATGAAACAGTCAGTGATGTCAGTTTTGTTTTCCCGCAAGCAAACCATACAGAGAATGGGCCACTCATTCTTCACTCACCATCTGAAGTTTGGGGCTACGACAATAATAAGTTGATACTTGGAGTCGTCACATCCTATCACAATGAACCAGAAGAGTTCATTGATGGGACAGAGTTCTATCTACTGGAAGTATGGATGATAGAAAACCTTATAGAAGGGATGAAAAACCAAAGGAATTTCAGAACGTTATGGTCCAAAGAGACTGGATTGGTACAAGAACCAGACGACTACAAGACCTGGTTAGAAACAATGGACACAGAGTTCCCTGGGCGATTTAAAAGACTCTTTGCAGGACCAATGTGGAGTGGCTGTGATCAAGGAGATATTGGATATACATTGAAATCAATAGTCAAATACTGGCAAGAAAGAGGTGTGGATTTCAGTATGTATCTGTACAACGCAGAAGTAGATCCTGTTACAGGCCTGTGGAAAATATCTGTGGCTTTTCAAGGGAAAGAGTTATTGAAATCACAACCAATATCGAAAGCCAAGAGGCAAGAAGGAGGATCAATAATGAAGTTGGGTATCCCATGCATCCTCGTGCAGGAGCAGAATGCCCTTCAGTTCGTTGAAAATGGTCACAATTTACTCGTCACCGGTCAAGCAGGAACAGGGAAGTCTCACCTGGTAAAGGCCATCGTTGATAAATTTAGAGAGGCAAACAAAGTTCTCGCCCAAGAGTGTAACTTTGCAAATCCAGATGAACACCTCATCGATGCGCTTATATTTGGAACCAACTCGGACCAGGTGCGATCAAAACTTTTGAAAGAACCAGCAGATATGACGTTCAACAAAGCTATAGACATCGCAAGAACAGAGGAAGCGACCAAACGTCAGATTCAAGGCGAGTACCACATTGTTCTTGATGAAACAGTACCACCAGTAGTACATCCACCACGTCGTATACCAGAAGCTCTTCGTAAACCCTTCAAAGCAGAGCTTGACTCGTTATGTGCTCAAGAAATACTGAAGAAAGTGGACAAACCCACTGACTGGGTTAACTCATTTGTATGTGTGACTAAACCAAATGGATCAATCAGGCTGTGCTTAGACCCAAAGGATCTCAACAAAGCCACCAAAAGGCCTCACCACTATACACCAACACTGGAGGACATTTTAGCAAAGCTGAATGGAGCCAAATATTTTTCAATAGTTGATGCACGAAGTGGGTACTGGAATATAAAGTTGGATGAAGAAAGCTCCTACTACACAACCTTCAATTCCCCTTTTGGTCGCTATCGTTTCTGCCGACTCCCCTTTGGCTTAATCTGTGCACAGGATGTATTCCAGAAGAAAGTAGACGAAACCTTCGGTGACCTTACAGGTGTGACTGGAATTGCTGATGATATTGTCGTGGTTGGATTCAAAGAAGATGGCAGTGATCATGATACTAACCTACAAGCTGTTATGGAGAGAGCACGCAGTACTGGTCTAAAGTTCAACCCTGATAAATGTGTCATAAAGAGCACTAGTATTCCATTCTATGGGCACATTTTGAGTGCAAATGGTCTTAAGGTTGACCCTTCAAAGGTAGAGGCAATCAATGCATTGGATCCATCGTCTTTACTTCCAGATTTACAGTCATTTCTAGGAGCTACACAGTATCTTAGCAGATTCATCCCTCATATGGCATCAGTTGCAGCACCCTTGTGGGATTTAGTCAAAAAATCCAGTGAATTTGTTTGGAGTCCTGAACACCAAGCAGCTGTTGACAAGATAAAACAAGCAATAGCAGCACCAACATCACTTAAATATTTTGACAGCAAGAAACCAGTAGTCGTTCAGGTTGACGCATCACAGCGTGGATTAGGCGCTGTACTCCTGCAGGATAATCAACCTCTGGCCTATTCTAGCAAACTACTAACTGACACTGAACGACGCTACTCCAACATTGAACGAGAAATGCTTGGAGTAGTGCATGGACTAGAGAAATTTCACTATTATTGCTATGGGAGACCAGTGGTTGTTCAGACGGATCACAAGCCCCTCGAGGCAATATCTAAAAAACATTTGGCAAGTGCACCCCCACGCATTGCCAGAATGCTCTTAAGAATTCAGAAATACAATGCACAAGTTACCTATATTCCAGGAAAGGACATACCACTCGCAGACGCCTTGTCACGAATCAGCCCTTGTCCTGGAGATGAAATCCCAGGTTTAGATGTATCGGTACATGAGTTGCACTTACACTTGAATGCAACTCCTACAAGACTTGATCAGATAAGAGATGAGACAGCAAAGGACATTGACCTAGCACTATTACGGACAGTCATAACAAATGGTTGGCCAAAAGTCAGATCAGAATGTCCATCACAACTACATGCATATTGGAATTATCGAGATGAGTTAACTGTCGCAGACGGCATAATTCTGAAAGGACTTAGGATTATAATTCCTAAGACAGTGCAAGTTGAAGTACTAAACCAACTACATTATGGTCATCAAGGATCAGAAAAATGTAAGCTACGTGCTAAAGGCTCAGTGTTTTGGCCTAATATCAATCAAGATATTGATATTATGGTGAAACAATGTGCACCTTGTCAGCGTCATCAGAAAGAAAACACCAAAGAGCCCATGATTCCACATGATGTACCGCAGAGAAATCATGGCATACTCTCGGAGCAGATCTATTTTACTGGAATAACTCACACTACTTGCTAG

Transcript

Actinostola_03904

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00158	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002078	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-