Gene detail

Detailed information of Actinostola_03163 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_03163	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	scaffold25_size1091033	180844	254561	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_03163

ATGTCATTGCCTATTACAATGTTCTTTGACATACTTTTTGTTACTGTAGAGGCAGTATGTGGCTTTGTTGACTTCATCAGTGGTTTAAACATCTACTGCCAACAAGAAAAAGTCAATGTTCCTCGATACCAAGAAGGCCCAGGTGTCGGTGGAGGCTTTGGTTTCCAAGTCATCATCAAGACCAGCATATACTCTACTAACAAAAACTGTAAAACTAAGAAGGAAGCCAAGCAGAATGCAGCGATGGTTGCAATGCTGGCACTGGATATTCAGTTTGTCGTTGGAGACCAACAAAGTGTTGAGCCCACAGTGAACAGCAGCCAGCAGTATAAATATATCATCTGGGATACTAATGTAGTAGAAAGAGAAGACTTGGCGTACTTCTGCAAGTCTTGCAGCAAGCTCATATGTCGCGAATGCACCGTGGAAGAACATGAAAAAAACTCACACGATTTTGAACCGCTGCAAGAAACGAGCGAAACGCAGAAGCAAAAAATGGCAGCACTCATCGGCAAAGCGAAGGAATCCACAATGCGTTACGTAAGAGCGTTGCGCGATCGTGAATTCCAACTTCTGGATGATCTGGACGCCTTGCGGGAGTATAAAACTACGTTACTAAGTGAACAAAAAGAGAAACTGTTACGTAAAGTGGAAAGCCTTGAGAGTGCGTGCGCGTTTACGCAGCGTTTACTAAAGGAGGGCGATGCGCTACACGTTGCAGTGGTGGGTGACTACGCTGTAGAGAGACTAAACGAGCTCAGTATGGACAGCAGTGACATCCAACCAGCTGAAGGGCCCGACGTAGAGTACGTAACTCATGAAGACGTTTTGTTTGACGTAATAAATACTGGAGGTAAAGTGGAAAACAGCACGTCGTTCCGTAAAATCAGTAAAGATATAGTCAGTGTCAGCTACACGCCTAAGATCCAAGGAGAGCACGAGATTGCGATTCAAGCCAACGACAAACACGTCGAAGGAAGTCCTTACATCATCCACATGAAGAGAGGTCACATGAGCTACGCCACAAAGAACAGTCCAGTTTGCCTTCGTTTCGGCAACAAAGGTACAGGCCTCGGAGAGACTGAATGTCCCACTGATGTAGCAGTGCGCAGCAACGGTTCCATTGTGGTCTCCGATTCGGGAAACCATCGGATTCAGTTCTTTGACAGTAGAGGGGTTGTACTACGTCAGTTTGGTTGCCAGGGCAACGAGCTTGGCAAGTTCCAGAGCCCTGCAGGTATCTGCGTGGATCAAGCGGGAAATATTGTTGTCACAGACCAACTTACCAACAGAATACAGGTCTTTACCGGTGATGGTGTCCTGGTTAGACATTTTGGGCCCAAATGTGGTAGTGCCGGTGAGATGAAGGGACCTTTAGGGGTGTCCGTCGATGAAGAGGGACAAATTCTTATAGCGGACCAATCAAATCACAGAATTGTGATTTTTGACAGCCAGGGATCCTATGTGCATCAGTTTGGTTGCCTAGGAACCAACGAGGGGGAGTTCAATAACCCATCATTCCTTGCGGTCAACCAAGATGGTGAAATCTACGTCACTGACACTTGTAACCACCGAGTGCAGTTATTTGATATGACTGGGAAATACATCGGGAAGTTCGGGAGGCCTGGTACGGGCAATGGGGAGTTTCAGTACCCATCAGGCATTGCGATCGATGCGTCAGGTTATGTCTTTGTTTCGGATCGAACCAATCGCATCCAAGTATTCAACCAGCACTATCGGGCAGTAAAACACGGTATATGTGCCATCTTTATTATCGAGGACATGCGCACTAATGATACTATTGTCTGGTGTTTCGAGTTGTACTTGTATTTCTTGTCGTTTGTTTTTGTTGTCCATAGTAACCACGCTGAACGTCGTAGCTGTCGTTGTCTTGGTAACAGCTTTGGCGCCTTTTGTGTCTACCACAGGTGTAGAGATGAGAGGAATTTCACAGGCTCGCTTCCCGATCTCAAAGCTTCCCTCAAAGCCACGGAACAACAAACAAAAGTTGTCGATCAGAATATCACGATCGTCGAGACGCATTTTCCAAAGGTATCAACCGTGTTACAGCGTTATGCCGTGGGAACGGCAAAGCTACGTGATAAAGGCGATGCGTTACACAAAGTGATTTCAACGTATGCTGAAAACGAGTCTCAATCGATGCGAGAAGGACTGACCGTGTTTGCTGATTGTCTCGCTGCAGTCCAGGATCATCGTGACGCTCATGTACATCGTCTTGAAGACCAGTTAGTCGAGAGCCTTAGCGTGTACGAAACAAAATGCAAGCAAGCGCGGAACGACGTGAAAAATAGCACAACCTTATGCTCGAAAGAAGTCAAGAGTTTTAACTCCCTCGAGAAGGCGCAAACACAGGCAGGGAATCGTAGTCGGATCTCGAAGGCTCAAGCGGAGTTCCAGAAAGCTTCCGGGGAGGCGAATCGCTCTTTGCAGATTCTCCGTCAACAAATGAACGAGTTTGAATCTCAAAAGATGCGTGACGTGAAAAAGGTTTTCACCGATTTTGTACGCGGTGAGATGGAGTTCTGTGCACGTGCGTTAGAGATCTACACCAAGGCCTACCAAGCCATAAATGGTATCAACGAAGATCAAGACCTTGATCGCTTCAACAAATCGTTGCTCGTCAAACCACCAACATGGGGATCAGCGCCAGCGCTGTCGTCCGTTGGTAGATACAACAGCGCGAATGTTAAAACTGTCGACGAAGGTCTACTCGACAACGCACCAATAGTGACCACGGCCGCGCTGCAGTCCATACCTGACAAGAAACACAGCGTTGACCCTGACATCCTTTACAAGGTACAACTAAAGAGCTCCATCCCTGAGATCAATGTCCCGTACCCAGCCCACATGGACGAGAATGTCGTTGAATGTCCGTGCCTTGTCAAAGTGGACCAAAGTTGGTCTGGACGAGGGACTGTGTTCGCCAAGAACAAGAACGAGTTGTCGGCCATCCTTAAAGAAATCAGGGATGAGAATGGATGGAAGGAGGCTATCCTGTTCCAAGAAGTCATCCAAGGAATCAAAGAGGTACCAAGCTTTCAGTTCCATTTGCACAAGTCGGGCGAGGTCTACTGGATCGGTACGACATCTGGTGGGTTTACAGGGTTTACGTGGACGAGCGCCTTGGTCGATTGGGACCTTCAAGATAACTACAAGGACCTGGTATGGGACAAATTCACCGTCCCAATCACCAAGTACCTTCACAAACAAGGTTACTTCGGGCTCGTTACATTTGAAGTCCTACTCACTGACCATGGGATGTACTTGTGTGATCTTAATCCTAGAGTGGGCGGAGACACGACGCATTTGCTGTTAGCACCGTTCATGGCGCAGATGGGATACACGCAATCCTGTCTCATGTTGAATAACAAGCTTAATGTATCGCCAAAAACTATCATCGAGAATGCCAACGACATAAACAACGCCAACGTCGGACGAGTTCTAGTTACATCGGCCATTAGTGACGGGAATGGCTGCCAGTTCGATTTGTCTATCTACGCTAAAACGCGCGAACAGTTGAAATGA

Transcript

Actinostola_03163

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF06730	FAM92	FAM92 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR009602	Family	CBY1-interacting BAR domain-containing protein/FAM92	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR035590	Domain	CBY1-interacting BAR domain-containing protein 1/2, BAR domain	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-