Gene detail

Detailed information of Actinostola_01546 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_01546	PROTEIN CBG26694	scaffold156_size547234	19400	31441	+

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_01546

ATGGACATTGGTGACCTAACAGGGTCCCAACATCAGCGTCTTCAGGAAGTTATTTCAGATTACCGCACCACTTTTAGCAAGGACGAGGACGATATAGGATTTTGTGACCTGGTAGAGCATCAAATAGTAACTAACGATGAACGCCCAATCAAAATCCCGCATAGACGAGTGCCGCCACAACAGTGGACAGAAGTGAGAGACTATATACAGAAGTCTTTAGAACGTGGTATAATCAGAGAATCATCCAGTCCTTATGCATCACCCATCGTCCTAGTAAGAAAAAAAGATGGTAAGCTTAGGTTATGTGTAGACTACCGCCTTCTCAATGCCAAGACTCACAAAGATGCATATCCTTTGCCTCGCATTGATGAAGCACTAGACGTCCTTAAGGGAGCAAAGTATTTCTGCAGCCTGGACCTTGCACATGGCTTCAACCAGTTACCAATGAGAGAGTCTGACATTGAAAAAACCGCCTTCAGGACTGGGACAGGTGGATTGTACGAGTACACCCGTATGCCGTTTGGTTTATGCAATGCTCCAAGCACATTTATGCGCCTGATGGACAAAGCCTTTGGAGACCTTAACTTCCAAAGCTTGTTAGTCTACCTCGACGATCTCCTAGTGTTTGGAAGCACCTTTGAGGAGACATTGTCAAGACTGGAGATGGTACTGTCTCGCCTGTCTAAGCTTAATCTGAAAGTAAAGCCCGAAAAGTGTCAGCTTTTTCGTGAAAAGGTTCGCTATCTGGGTCACATAGTCACAAGTGAGGGGACCAGCCCTGATCCTGAGAAGGTGCGTGCCGTTATGGAATGGTCAAGACCAGAGACACTACGTGAACTTCGAGGCTTCTTGGGATTGTCTGGATATTACAGAAGATTCCTCCCAAAGTATGCAGAGATCGCCAACCCTCTTCAGTGTCTCCTACGAGGACAAGAAAGTACAGGACGTAAAGGTCGGAAGAAACCAGTTGTTGACGTGGAAGGGAGTGTCAAGGAGAAATGGGATTCTACGTGTGAGGACGCCTTCAATAAGCTGAAGCAAATGCTAACAACGGCACCGGTGTTGGGATTTCCAGACTTCACTCGCAAGTTCATCTTGGAGACAGATGCAAGCTTTCATGGCTTGGGTGCAGTCCTATCGCAGGAACAGGAGCATGGACTTGTTGTGCTAAGTTATGCTAGCAGAGGACTTAGACCTAGTGAGCGCAACATGCAGAACTATTCGAGTATGAAGCTAGAACTTCTCGCACTGTACTGGGCCGTCGCTCAGAAGTACCGAGATTTACTGATAGGGTCAGACTTTGTCGTGTATACTGACAATAATCCTCTTAGTTACTTACAGACCACCACGAAGCTGGGTGCCACAGAGATGAGATGGGCAGCGGATCTCGCACAGTTTAATTTCACCATAAAGTACCGCTCTGGCAGAAGTAATGGCAACGCAGATGCTCTCAGCAGGAAGACATCCCATGGTGAGGAGCCCATATCAGCTAGGCTAGAGGAAGTCACTAGTGGACGAGGTCAGGTACAGAGTCGAGAAGTCGGAACCTTGGTGCCCCCATGTATCGCAGTGTTTGTTGAAGAGTTGACAGCCGAACCCCTTGTACAGGAATCACGAGTGAGATCACAAAGTGTAGCACCCAAGGCTACGTCAACATTTCCATCTATCCCCAAGGAAGACTTAGCTAATATGCAGCTTGGTGACGAGGCATTGGGCCGACTATGGCATTACTGGAAACTAAAGCACCCTCCTACCCTTAGACAACTGATGAAGGAACCCAAACTCGCACGTAGGCTGTTAAGAGACTGGAAGCGCACTACAGAGGAAGATGGCATTCTGTATCGTGTCATTTGTGTACATGGTGAAGAGGTTAAGCAGCTGTTACTTCCTGGCTCACTGAGGAGTAAAGTGATGGCTTCGGTTCATGATGATTTGGGACATCAGGGAGCCGAGAAGACAATAGCGGTAGCAAGAAACAGATGTTACTGGCCCGGAATGGCTATCCCTACTAAGGACCAACGAGCCACCACAGTAGCACGCACATTGGTCAAAGAATGGTTTGTACGCTTTGGAGTTCCTAAAAGGATCCACAGTGACCAGGGACGGAATTTTGAGAGTAGAGTAATACAAGAGCTTTGCACAGTGTATGGAATCACGAAGAGCCGGACAGCCCCATACCATCCGGAGGGGAATGGCCAATGCGAGAGAGAACCAATCCTCCCTATTGACTATATGCTACAATCTGTGGGTCAAGAAGATGGAAGCGGTTGCATTGAGGAATGGATCAACGAGCACCAGAACCGGTTGGACACTGCATTTAAGATAGCTGCAGAGAAGACAGAAAAGGAAGCTCTTAGGAGACGAGTTAGGAACGATGCCAAGGCAGAAGTTACAAGCCTTGTGGTCGGTACAAGAGTGTTCCTGAGGAATCGTGTCCAAGGTCGCAACAAGATGCAAGATGTATGGGATGCAGCACCCTACAAAGTAGTTAAGCAATTAGACAGTGGTAACACCTATGTCTTAGAGTCGTTGGATGGAGAGGAATCCAGGAAGACAGTATATAGAAAGGACATTCTTCATGCAAAATATCTTGCTAAGGATATAGAGTTCCAGGATTCACCAATGTCATCCAAGGAGGAAGATGTTACATGTACTCCACCAAGAACACCAACGAAGGTCATTGATGAAAAGAAAGACATGGAATTCCTATCCAATACTCCAGACGAGCCTGATAGTGAAGATGATGAGGACAACTTTGAACAACTGCTACCGGATCATGCGCAGGAGAGGAGTGCTCCCAGCGGGCCCCTCGGAACATTTGATTTTGATTCACAGGTGATGTCACAGGATGATCAGCAAGACCCACCGTATGAAGAAACAGCAGTTAAGGAACAAAGGCAGAGAAGCACAGCTGAGCCAACCACTGATGATCCTGTATCAGAGTCAGGAACTTGCTCTTCCCCTGATCACCACAGTACAAACCCACAACCAACAGTTACTGAAACCAGAGATGATGCCGGTCCTCCAGTTAGGCGCTCGACTCGTCAAGGTGCAGGACAGCATCCCAATCCTTATCGGCTACCGATGCCCGTGGTTCAGGAGAACAAGATAACAATGATAGGACGACAGGAACACCACAGCATGAAGGTCGAGGACTTCCAGTTTGGTCGAGATGAAAACGGCACAAAGTACGTACAGTTTGTAGAGAATCCCACCAAAACACGCCAAGCTGGCTTGAAAGCAAAACCAAGAAGCTTTTTGCCAAAAATGTTTGCAACTGGCGAAGAGAATTGCCCTGTCGCTCTCTTTGAAGAGTTCTTGTCAAGACGACCACCTGAGCTACAAGCACAAGGTCCATTTTACCTGTCATGCATGCAAAATCCCTCATCTCATGTATGGTTCAAAAGACAGCCGATGGGAATCCACAAGATCAACGACATGATGAAGTCAATCATCGCTGGGACATCCCTTGAAAGCTCTACTAAAAACCTCACCAACCACAGTGCTAGAAAAACGGTTGTGAAAAAGATGAAGACAGCCGGCCTCGAAAGAAGCTCTATAATGAAGGTCACTGGACACATAAATATCTCCTCTCTTGACGATTACGATGAAGCTGATGAGAACGAACAGCGACAGCTATCAACTGCCATCAGCGGAGCGAAGAACATCACTTTCAGCAACCAGAGCCACATGCCACATGTCAAAATGCGGACGTCTGAGGAGGAAATTAACTTCCGGTTCAAAGTAGATATGGCGGCTAAGATCCCGGCGAAATAA

Transcript

Actinostola_01546

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF12012	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR021893	Domain	Domain of unknown function DUF3504	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-