Gene detail

Detailed information of Actinostola_01360 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_01360	PROTEIN CBG26694	scaffold148_size556436	295233	381113	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_01360

ATGAACCTAAAGAAAGAGGAAGTGAAGTTCATGGGTCATGTCATCACAGCAAATGGACTCAAGCCAGACCTTGCCAAGGTGTCAGCCATCCAGGAAATGCCTAGACCTACATGTAAGAAGGAGCTGATGACATTACTGGGATTCATAAGCTATCTGTCTAAGTTCTTACCCAGGCTTTCTGATGTTGTGAAACCGCTACGCGACCTCACCGCAAAGGATGCTCAGTTCCTGTGGTCACACCAGCACGACAAAGCTTTCCAGGAAGTCAAAGAACTTGTGGTGCAACACCCGGTTCTGAAGTATTACAACATCGAGGAAGAGGTAACCCTGCAGTGCGATGGCATTGGGAGAGAGAGAGTCATGTCTTCAAAATACAACAGAAGCATTGCAACAATAAATGGGCCTGACAAATATGACACACTACAGGCATCATTCACTACACTGTTTAATGAAATCAATCGGCTGATTGAGAAAGGTGAGCTCAGCAATAGTGCCAAGTACTTCTCAACCTTTGCGAATGTAAACAAAGAGGACAAAAACAACATCAATGGCACTTTTTGCTTGGAGGGTGGAGACTCGTGCACCTGGAAACCATGGGCATATACTCATCGTATTCAGAAAGCTGTTACGGATTCTCCAATGTTACAGAGTGAAAAAGAAGATGCTCTTTATACTTGTCAAGAGGCGATTTCCGGTATTCGTGCTTGGAAAGCACACCAGCTAAGATTAGTAAATCAGGACAAAGCACGAATCGATGCAATTGACGAGCTGTGTGACGAAGATGCTCTCATTATCCAAGACTGGGCAATGAAGTTCTTGCCAAGACAATATCGAGAGTCTCAAGGTGATTGGTTTGCGAAAAGAGGTTTCTCTTGGCACATCTCTGTTGTAATCAGAAAAAGATGTAATGAGATAGAAAGCCAGGCGTTTGTCCATATCGTCGAGCAGTGCAATCAAGATAGTTCATGTGTGGTAGCACTCATGGAGCATGTGCTGAGAACCATCAAAGAAGAAAATCCTGACATCAACAGCGTGTTCTATCGCATGGACAATGCTGGGTGTTACCATTCGGCAAACACCATTCGTGCATGTGAAGTGATCAGTAAAATGTCAGGGATTACCATCAAACGCCTCGACTTCTCTGATCCCCAAGGAGGGAAGGGACCGTGCGATCGGTTTGCAGCAACCCTAAAGAATCATGTTCGTGCTTATTCAAACGAAGGCCATGATGTTGCTTCGACGCAGCAGTTCGTAGAGGCTCTACAATCCCATGGTGGTGTTCCCAGTGCCCGAATATCATTGTTGCACAATCCACACTGTACAAAATTGAATGTGAAATGGCCAGATTTCAGAATGTTTAACTCGGAGGGAGTGTTTTCTGTGGGAATATTTAGGCCTGTTAAACCAAGAAGAAAGCACACCAAGTCCGTCTGTAAATCCACGGACAATCACGGAAGTGACGATCTTGTAATGAAAGATGGCATTGTTGCTGAAGCAGACAATCATCAAATAGCTAGTGATTTTGATAAAGCCTGCGGTGATGATGTATGTGATGATAATGTTTACGTCGATGAAAGTGATGATAGCGATGACGATAGTACTCGTGATGTTGAAGACTGTGTGGACGTCGATAGTGATAATGAAGAAGGACTGAGTGGCGAAGATGATGATGATGATGCCGATGGGGATGGGGATGATGAAGATAACTACAACGACGAAGGAGCTGGGAACAATAGCGACGATCACTCTGGGGGCGATAGAATAAATCCTCGAGAAGAGAAATCCAAGTTGTTTGTATGTCCCAACGAAGGTTGTGTACGAGCATTTCAACGATACAAATCAATGATCAATCATGTTACCTACGCTTTGATTGTTCCTCATTTAGCAACCGAAATTCGACTCATTCGCCAGTTCAAAGTGGAAATACCACAAACTAAAGAAGAAAGCTTTAGGAAGTTTATGCAAGATGTGAGTGGACGAATTTTGCAAGAAGAGGAAAACACGGAACACTCCGATAACGAAGAAGCGTTTGGCATGGAAAGTCCAGAGGAGCTGGCTAAACTGCTGAAAGCGTGGCTCAGCAAGAAGAGGGTTTCTGTGGCCTTTGTGGCGTCCAAAGTGGTCGGACGTTCACAGGGAACCCTTTCTTCCTTGCTGAACAAACCACCGTCCACGTTTCCAGCTAGGACTGGAAGGGAGCCCTGGAAAAAGATTAACGAGCTAATGAACTCAAGGGAGACACAAGATGATCTCGTGGCCGAGTATAGAGAAAGTAATAACCCTAAAGAAGACGCAGGCCCACCCAAGGCAAAGAACTCAAGGAAATTGTTCCAGAAACACGAGTTGGCCTCCCTGGACGCTGTATATCCAACGTCCAGGTATCCAAGCAATGGAATGGTGGACACGTTGTCCAAGTCACTTGGCCTTGACACACAACAGGAAATCGATCCCGGGGAAAACCTAGAGTACGTGATCGATCGCATCGCGCAAATGCATTTCTTTAAAACATCCGTCAACATGGACGCTATCTTTGAAAATTATGGTCGAGTTTTGATTGGCCCTCTTTTTTACCCTCAAAAAGAGGGCCAATCAAAATCAAGATTCGTATCACGCCACAGAACTCGTAATAGCAGAAACATGCCTCGTGTTACCAAGCCACGCAAACGCCCAGCTACATCTATCTCGGTGCCAGCTGTTCTGAGACGAAGTCAGCGAAGTCAGGAGTCATCCTCTGCCATACAAGTTCCCGATGTTAACCAACCCGATCCACCCAGTCAGGGTTTACCCACTACAGCTCCGGGCCTTTCAGCTGAGGTGATCCAGCAACTGACTACAGCAGTATCACAGGCCGTAGTGCAGACAGGGCCCCTGTCTGCACTCTATACTCCATGCCCACCAGCACGGCCACTTGTTGAGGCTCCATTCCAGCCCACTGTGAGGCAACCTGCTCTTGTACCATCTGTGGCCGCAGGGGGAGTAGATGCCACTGTACAGGGGTCGGTGGCATCAGCCCTCAACTCCCTAACAGCGTCTTCAAAGCCTTTGAGTGCACATGCCATGGCGACGTACGGGAAAATCGACGAGTATCAAGAGACAGAAGACTGGGGAATCTACGTGGAAAGATTAAACCACTATTTCGAAGCGAATGATATCAAGAGTGAAGACAAGCAGAAGTCCATTTTTTTGGCTACTGTCGGAGCCAAAACATACAAGCTTATCAGGAATTTGTTCACTCCTGATCAACCGAAAGATAAAAGTTATGAAGACCTTACGAAGCGATTGCAAGAATTCTACAAACCCCAACCGTCTGTCATCGTTCAACGCTTCAGATTCAACACTCACACTCAGGAAAATGGGCCACGTCTCTCCCGTGCATGTCGAAGTAAGGGAGATGCCAGCAAAACACAGCCGCATAAACCACAGGGTACCCATCGCATGCAGGGAGAGGTTGGGAACTCCGACGAAGAAGATGCAGGACCGTACACTTTTTACACAGTCAGAAGTAGTCGCTCTCCACCATATCAGGTGAACATTGAATTAAATGGTAAAGATTTGCAAATGGAGCTAGACACAGGAGCCTCGCTATCGATTATCAATGCCAAAACATATGAAACCTTGTGGGGAGGGGAAGACCGATCCCCCTTGCAGAACACTAACATGGTACTACAAACCTACACAGGAGAGAAGATTAACCCAAAGGGAATTATTGAAGTGTCGGTCGCTTATGGAAAGCAAAACGTCAAGTTACCCTTACATGTAGTAGAAGGAAAAGGCCCCGCCCTCCTTGGTCGAGACTGGTTAGAGAAAATACAGCTCGATTGGCCCACAATTAAAACAATATCACAAGACGTCGTCAACAGCTACCCCCAGTTGTTTGAAGAGGGACTTGGTACCTTGAAGGGAAAGAAGGCGAGAATTCACGTAGACCCAGGCACTAAACCAGAATTCTACAGAGCGAGACCAGTACCATATACACTGCGAGAGAAGATTGAACAAGAGCTGGAGAGGCTGCAAAAAGAAGGTACCATTGAACCTGTACAGTACTCCGATTGGGCCACGCCCATCGTCCCTGTTGTCAAGTCTGACGGTACAATTAGACTCTGTGGCGATTATAAGCTCACGGTCAACAAGGTCTCAACATTAGATGCCTATCCTATTCCCAAGATCGATGACCTCTACACAAAGCTAGCGGGGGGTAAAACCTTTACAGAGCTTGATCTAAGTCATGCCTATGAGCAGATGTTACTGGACGACGACTCCAAGCAGAATGTGACGATCAATACACACCAAGGCCTATACAGATATAATCGTCTACCATATGGTGTTTCATCGACACCGGGAATTTTCCAGAGGACTATGGAGACCCTTCTGCAGGGTATTCCATGCGTAGGAGTGTTTCTAGATAACATTCTCATTACTGGACGCACAGAAGAAGAGCACCTGAGAAACATCAATGAAACTCTCAAACGCTTATCAGAAGCTGGTCTACGACTTAAAACCAAGAAATGTAACTTCATGAAAGCATCGCTGGAATGCCTTGGTTATCGAGTAGACGCCGAAGGATTTCACCCTGTTGAAGCCAAAGTAAAAGCCGTCAAGGACGCGCCAACGCCTAAGAATGTCTCAGAATTGAAGTCATTCCTGGGAATGATAAATTGTTATGGTAAGTTCTTGCCAAACCTAGCATCAACGCTAGAACCTTTACACGTTCTGCTGCGTCAAAACCACACCTGGAAATGGGGAAAGGGACAGGAAAAGGCTTTCCAAGCCGCCAAAGACCTTCTGCAGTCATCACGTCTGCTGGTTCATTATGACCAAACCCAAGAGCTTGTACTCTCTTGTGACGCTTCTCCCTATGGAGTTGGTGCGGTTCTGGCACAAGTCATGGAAGTTGGTTCTGAGAAACCAGTGTCTTATGCTTCCAGAACCCTATCCACAGCGGAGAAGAACTACTCCCAACTAGACAAAGAGGCACTAGCAGTTGTTTTCGCAGTCAAGAAGTTTCATCAGTTCTTATATGGCCGTCATTTCAAGATTTACACGGATCACAAACCGCTATTAGTTTTGTTGAGCTCGGATAAAGCTATTCCACCAATGGCATTAGGCAGAGTGCAAAGGTGGGCCCTAACACTCTCAGCTTATGAGTACGATTTGGTCTACAGACCTGGACGATCCCCTATGGGGATCACGAGTCATAGTCCCTTCGCAAGGGAGAGAAGAAATGCTGAAGGTACTACACGAAAATCATCTTGGGATCTCAAGAATGAAGAGCTTAGCGCGAAGCTATGTGTGGTGGCCGAAACTGGACGAAGCTTTGGAAAAGACAGCCAAAGGATGTGA

Transcript

Actinostola_01360

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	CUT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02376	CUT	CUT domain	Domain	Interproscan
PF13975	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR003350	Domain	CUT domain	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-