Gene detail

Detailed information of Actinostola_01093 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_01093	RETROTRANSPOSON	scaffold1353_size128275	39380	66965	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_01093

ATGAAGTTCAAACTCGCTCTGCTGTTTCTCTTTGGCTTGATCGCCTTTTCTCTTGCTGCACCAGTGGAGAACTTGGATGAAGATGCAGAAGTGGCTCCGGATCCTGTGCTGAAAGAGGATGCCGTCGAATCTGATTCAGAAGACAACGACGACGATGACAAAGATCCCAAGAACGTAGAAGATGCAGAGAAGGATGTGGTGCAGAATGAGCAAGATTCATTCAAGAGCAATGATGATACCACTGCAGAAGGATCAGGAGGTGCCATCGACAGTGCTATCGATATCATGGCTAATCATAAACATAATCATAATAATCATAATCATAAACCACCACGGAACGGTCAGACAAACCCCAAAAAGGACACTGGTGCCGGAAAAACCAGGAGAGTATGTCTTCCCATCGTACCCATTAGAGTTCGTGGTAGAGGAGGACAGAAAACGATCAACACTTACGCCCTTTTGGATAAAGGCTCGGACACCTCACTGTGCGAGAAGCGACTAATACAACAGTCAGGAGTAGAAGTTGACAAGTTACACATCTCCACTGAAGGCGTCCCAAGGCAAGAAGACATCCCTAAGTGGCCACACCTCGATGGAATAAAGGTACCAGAGATAGACAGTGGAGAAGTCACCCTGCTTATCGGCCGCCATTGCTTGAACACTCACTTTATTAACCGAGAAAACGAGCTCAACGAGCAAGTAGAGAAATTCTGGAAAACGGACTTTGGGGACCCAATATTCAGCACCAAAGAGTCAATGTCGACTGAAGACAAGAAGGCGCTATCCATTATGGAAGAAACGATAGTCTTGGTAAAAGACCACTACCAAATAGCACTCCCTTGGAGATACAAGGACGTCATCAACGACCATCTAAAGAAGGGTCACGCTCGTCAAGTTATCGAGGAACACAAAGAGAAAGATAACCCCTCAGTGTGGTACTTACCTCATCATCCGGTGTGCAACCCGCAAAAACCCGAGAAAGTACGCGTGGTATTCGACTGCGCCGCGAAGTGGCAAGGCACTTCATTAAATGACCAGCTTTTCCAAGGTCCAGATTTAACGAACAAACTAATCGGCGTCTTAACTCGATTCCGCGAAGAACCCATAGCGGTAGCGGCAGATGTAGAAGGCATGTTTCTTCAAGTCCGAGTAGACCCGAAAGACTGTGACATGCTCAGATTTCTGTGGTGGCCTGAAGGCGCTAAGAGAATTGCGTCCGAATTGAGCAAGTTACTGCGACAAGGAGGATTTCGCCTCACAAAATGGATGAGCAACAAGAAGGAGGTTCTTAACGCAATACCAGAAGCAGAAAGAGCAAAGAATGTTAAGAAACTAGACTTTGAAACATTCCCGACTGAAAGAGCCCTTGGAGTCCAATGGGACGTGGAGGAAGACCGTCTCGGATTCAAGACCCAAGTGAAGGAGAAACCTCTTACGAGGCGTGGGATACTATCAGTCATGAGTTCCGTATACGACCCGCTGGGAATTCCTCCAGAGTTTGGCGACGTCATATTGAGAGAATTACATCACTTTGGCGATGCATCGCAGTCAGGTTATGGAGCGGTGTCCTACTTGAGATCCAAGAATTCCAAAGGAGAAGTGCATGTGTCATTCCTGATTGGAAAATCCCGACTCGCTCCGGTGAAGATTACCACTATTCCAAGACTGGAGCTGAGCGCAGCAGTTGTGGCGGTGAAGCTAGATAAAATGCTGAGAGAGGAACTGGAACTACCGATACAAGAATCATTGTTTTGGACTGATTCTACCACAGTACTTCAGTACATCTCTAATGAGACCAAAAGATTCAGCACATTCGTAGCTAATCGCCTTGCTGTTATACATGACACTTCGAACGCGCAGCAATGGAGGCACGTAGATTCCAAATCAAACCCAGCAGATGACTCGTCACGCGGTCTCAACGCCGACCAAATGATCAGCGACGCACGATGGCTAGAAGGACCCGCCTTCTTATGGCAGGAAAGGAGCTTTTGGCCTAGTGTTCCGCCTGCTTTGACACAGGTCTCTGACGACGACCCAGAAGTGAAACGTGAAAGACAAGTACGATTAGTTCAAGGAAACTCAGATGATGTGATTAACTCAATGTTCAATCGATATTCTTCGTGGCATCGTTTGAAAATTGCCATCGCTTGGCTGTTGCGGTACAAACGTTTCCTCGTCAATAACTACCGACAACGAAGCATCGAGACAACTAGCGAGTTAATCAATGGTGCAATCACTACCCAGGAGCTTACGACTGCTAAACACGAGATTATCAGATATACACAACGTCAATCGTTTCCAACGGAGATGGCTGCTCTTGATGCTAACGTAAATGATGAAACCCATACGAAGGCACGGTCCCAGTCAACGAAGAGGCTGGTGGAAAAATCAAGCCCCACTTACAAGTTAAACCCACAGCTAAGAGACGGTATGTTATGCGTTGGAGGGCGACTCGAGAACGCACCTATAGCCGAAAGTGCTAAGCACCCGCTGATCTTACCAAAGAATCACCACATTGGCGATTTAATCATTCGTCATTATCACTGTATGTACGGCCATGTTGGCAAGGAACACGTTCTTTCACTTATAAGACAGAATTTCTGGATTATAAGGGCCCGAGCGTCAGTGAGAAGGTTACTTGATCACTGCTTTGAATGTCGAAGGCGCAACGCACAACCTTGTGAACAGATGATGGCAGGTTTACCTTCAGACAGATTGACTCCTGATAAGCCACCGTTTTCTTACGTCGGTGTTGATTTCTTCGGGCCTCTACAAGTAAAACGAGGTCGCACCATCGTCAAGCGCTATGGCTGCCTCTTTACATGCTTAGTCATGAGGGCGGTTCACATTGAAATTGCGCACACCCTGGAAACCAGTAGCTTCATCGACGCTTTACATCGTTTTATAAACCGAAGAGGCAAACCCCTACTCATGCGAAGTGACAATGGCACCAACTTTAAGGGTGGAGAAAGAGAGTTGAGAGAATCCATCCAAGAATGGAACCAGCAAGCCATACATGAATTTCTAAGACAACGAGAGATAAGATGGATCTTCAATCCCCCAGCCGCAAGTAACATGGGCGGAGCCTGGGAGCGAATGATAACATCGGGGTGCTTACCATTTACTCGGAAAAACCGGAAATTCCGGTTGGAAAAACAAATGTACGACTTTTGGAAGTTTCCAGGAGGAATTGGTAAAGCCGCTGACATCCATGTCAAGGCACTTGACTACAACAATTTCGCAAGCTATTTAAACGGTACAAATATGAAGTACGAGATCCTTTCTCAAAATGTGCAAGCTTTGATAGACCATCAGAACGATCATCCTCAGTTTGCAGATGCAACGGAAGAAAGTTGGTTTCTGGAATACCATCCATTTGACGAGATAGAAAGCAAGATATCCAACATTGTCAGACAATCAAGCAATGCGGAATTAGTGTCCATTGGTAAAACATATAATGGCGAGGACCAACTTGCAGTTAAGATTGGAGGTGCACCCAAAAAGCACAACCCGGTGATATTTATCAACTGTGGTATTCACGCCCGCGAGTGGGTGGGGCCAGCCACGTGTGTGTATATGATTAAACAGCTAGCTACCAAATATGGCAAGGACCCAGCAGTAACGGCTGCTTTAGACAAACTAGATTTCATCATCCTACCAGTGTTGAACGCTGATGGTTATATCTACTCATGGACCGATGCATACATATCAGTTGTTGGACTGAAAATAAAACCAATGTAG

Transcript

Actinostola_01093

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00246	Peptidase_M14	Zinc carboxypeptidase	Domain	Interproscan
PF02244	Propep_M14	Carboxypeptidase activation peptide	Domain	Interproscan
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000834	Domain	Peptidase M14, carboxypeptidase A	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR003146	Domain	Carboxypeptidase, activation peptide	Interproscan
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036990	Homologous_superfamily	Metallocarboxypeptidase-like, propeptide	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004181	Molecular Function	metallocarboxypeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-