Gene detail

Detailed information of Actinostola_00387 in Actinostola sp. Cb2023 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Actinostola_00387	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 9	scaffold1100_size157037	106622	128181	-

Gene Structure

More details in Jbrowse Sequence

CDS

Actinostola_00387

ATGGAATCCACAAAAAATCGGAGAAACAGGAGTGTCCTTTTGGGGATGATGAGCAATGGCGACACGAAAGAATGGGACTGTACTTGCTTGTTTTACGCAATCATGTATTCAGACTGTGTAGGAAAGAAATTGCATTCCATTGTTAAAACAAGCGTGAATGAATTAAGGGAAATCCGTAATGAAGTCTTTGCCCACACCGCTGATGGGAGTCTCTCTAAGGTTGATCTCCAAGCCTCCGTTCAAAAGATCATCACAGCCTTCACAACGCTAAAGCTCGATACGACTAGACTAGAGGAACTCAAAGGGCAGAACAGCTTTCCAACCGAAGAGCTTAACAAAATCACGCAGCAGTTCGATCGCGAAAAGGAACGAAATGCTGAGCCAGTTTCTTTTTGTGTGTTGCCTCCGCCACCCTCTCACGACACCATTGGTCGATTGGATGAGGTTGATAGAATATACGAGAAGATGAAGGGAGTGTCAGATGACAACAAGGGACAGACGACGGTTGTTTATCTGTCTGGAAATCCTGGCTGCGGTAAGAGTGAATTGTCGAGACAGGTTGGAGAGAGGTACTTTGTCTCTGATGACAACCCAGATCTAGCATTCACGATGACCATCAATGCATCGAACATGGACACGCTGCTTCAATCGTACGTTGAATTTGCTGGCCGACTTAAATGTGATCCAGATTCTGTATCAAGAATTGAAACATCGCAAGGTTTTTCTCCAGAGAGAAAGGTCCACCAACTACAAGTCCTTACTGGTCATCAAGTAGCCAAGTATTCTTCGTGGCTGATAATCATTGATAACGTGACCGATCTGAAATCATTTTCAAAGTATTGGCCACAGAGTGGAGAAACGACTAGCGGCGGCAAGGGTCAAATCCTGGTCACCACCCAAGACAGTCGATCTATTGTAGACAGCTCCCACTGTGAACACATATCTCTTAGTCGCGGTATGACATATAAAGATGCCGTTGAAGTTCTCTGCAAGATATCTCACTTTCCAGGGGAGACTGATGAAATCTTGTTGAAGGTTGCCGAAGCTTTAGATTTCCAACCGCTTGCCTTGGCGTGCGCAGGCGTTTATATGCAGCGCATTCGCATCGCAAACAGCCTGTTTACATGGCAAGAATGCCTGCAAAAAGTAGAGAAAGGGAAACGAGAAGCAACGGAGACCGTGTATGAGAAAACCAGCTTTAATTACCCAACATCGATGACGGCAGCAGTGAATTTGGCCTTGGAGAGAGAAATGAAGGAAGAAAAGATTATGAAGCACGCATTTGAGTTCCTTTCATCTATAGCCCAAGAGTCCATCCCACTAGAATATGTCGTTCAATACGCCATGAATTGCATGCCCGATGAAGACGAAGATTCAGTGGCGGCAACTATTTGTTCATCGTCTTTGCTGATTTCCTCTGGCGAAATGGAGGAGCCAGCGAAGGTGAATATCGTGAATGAGTTCAATCTTCTTCCTGGCATCTTTGATATTATCCACTCTGTACAGAAGACTGGAGACACTCAAGAAATGGCTAAAAAGGTGAACAACTTCAGAGGTAAGATTCAACATTGTAGAGAACTACTAGACACACTGCCTGGGTTGGATATGAGTTGTGAGGAACAAAAGGCTCTTCTTATGAAGCATAACAAAGAATTTGAACAGAAAAGGATGGATCAGAAAGAAAAGAAAGAAGAAGATGAGGCTTGTGGTGAAGACGAATTCACACCAGACAACGATCTGCTGAAGAAGAAGCTAGGTGAGGTGACCGCCATTCTGGACATGGACGGTTACATGGTCGAGGATAGAACGGATCAGTGTTTAAAAGCGCAGTCCATGACAATGGTTGAGGAAGTAAGCGACAGTCAATTATGGCTTGCGGGCGAACAGATTGAAGCACCCGATGATGAACTAAGAGACAGTCAACTACTACGTGTGGCTGTCGAATATGAGAAAAAAGTAGAAAACCCACAGAAGGACGAAGAGGACTTGAGAGACAGTCAATTAGTGCGGGTGGTGGAAGATTATGAAACAGTCGAGGAAGTGAACCCTTATGCGTCGGAAGGTATCCGCTTCATTCGGGAAACACACCCGAACCGCCTTCTTCAAGTTTTCCACAAGCGCAAGAACTCATGA

Transcript

Actinostola_00387

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07544	Med9	RNA polymerase II transcription mediator complex subunit 9	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011425	Family	Mediator of RNA polymerase II transcription subunit 9	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039242	Family	Mediator of RNA polymerase II transcription subunit 9, metazoan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20844	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-