Gene detail

Detailed information of Acti_049231-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_049231-T1	TNF RECEPTOR ASSOCIATED FACTOR	ScLC4GM_938	81312365	81323936	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_049231-T1

TATCAAATGTATTTTATGCATATGATACCCTAAGACTAGTAAGCTGTCTCTCCTCTTATGGATAATTATGGCAATGGATGGCTCTCTTCGTTTGGTCCTGCCAGGCTTAGGAAGGACTAATATTAACAATTGTCCTTCTGCTAATCGCTATTTGCCTCTTCCAAACGAGAAAACAGCAACTCTTGGGCCCGTCCATTTTACTTGGGTCACGTTTGCGGTGGAGGTTTTGAGTACAGTGGGTACTTAGTTCCTCGCGCGTGGACTGCGATGTCAGGATATGTGTTGTCAGCGGCTGACAGGCAGAACCTCCAGTCCAAGTACTTGTGCTCATTCTGTGAGTACGTCTTGAGAGACCCGCGACAGACGGCATGCGGACATTTCTACTGCAGATTGTGTGCTGAACGAATTATTGAACCAAGTGGCTTGTTGAGATGCATCCGAGATGACACATTACTGTTGCCCCACGAGGTGTTCTCTGACAACTTTATGAAGCGTGAGGTCTTAGAACTCGTTGTGAGTTGTCCAATTGATCCAATGTGTATCTGGAGTGGAACAATACGACATCTCGAAGAGCACGAGAAGAACTGTTTGTTCTTCAAGATGGAGTGCCCCAATTATGGCTGCACTGAGGTGGTTCACAGACTGGAGATGAAACAGCATTTAGAGGAATGTACATTTAAACAAACATTACCCGAGAAAGAACGAGAAGAAAAGACTAATATTGCTGTAGCTGAAGGTTCCAGTAGTGCTAATGGTCGCTGTCTGTTTGACGCGATTGGCTGTCGTGTGCCGAAGACTTTAACAGACGTTCAGATTCAAGAACACGCCACGATATGCAGTGCCTATCATCTTGGACTCCTTCTTAATTCCGTTTTAAAACTCGAGACGGATTTCAAATCCGTTTTTTCAGGTAATGAAAAGCTGGTGAATAGCAGCGTCGTGGGTGATAAAGCATCAGTGGGTATCTTGACGCAGAAGCTTGACACAATGGTGTCCTACGTAAACAGCTTCGAGGCCAAGTTAGCGGATCATGGCGAACGTATCTCATGCTTAGAGAAGTCGTCCGACTCGGAGACCACCAGACGTGCCTACTCTAGTTTGGTGGGTGGGGTGGGTGGGGCTAGTGGTTGTGATTCACTTTCGAGACGATTGACAAACGTAGAAAACAACAATGCAAGCTTAGGGCTATTAATCGCAGAATTGAATGGCAACATCGATGAGTTGGGCAGAAGGTTTAGTCAACTGGAAACAAGACACAGTGCAGACCAGCAGACGATACGCCGTCTACAAGTGCGGCTTGACGCACAAGATAACGCCCTGGGGGTAAGAAATGTCACTGTTTCCGACCTCGAGAATCGAGTCGAGTCCCAGTCTTTAATTACTTATGATGGGGTCCTGCTCTGGAGAATCACAGACTTCGCACACAAGAGAAATGAGTCTTTCACTGGAAGGAATGCCTCTTTTTATAGCCCGCCTTTCTACAGCAGTCGCTATGGTTACAAGATGTGCGCGCGCATTTACCTTAACGGAGACGGCATGGGCAAAGGGACACACGTTTCGTTGTTCTTTGTGCTCATGCGCGGTGAATACGACAATTTACTCCGCTGGCCATTTAGACAGAAGGTCACCTTGATGTTGTTGGATCAGGATAACGTGGACCACTTGATCGACGCGTTCAGACCTGACCCCGCCAGCTCGTCATTTCAAAAACCCAGAAGAGAAATGAATGTGGCATCTGGGTGTCCATTGTTTTGTCCACGGACCGAACTTGATAGGCACGCGTACATACGCGATGACGTCATGTTTATTAAGGTGATAGTGGATACCTCAGATGTCTAAGTACTTCAGCGGTCAACATGGAAACCGCTTTGTTTAATTGCTCAGTTAGTAGAGCCTAAGTCTGATTAAGTTGAGAGTAAACCTGAGGCCGTAGAAACATGTTCACTAAATCGTCTGTTGTTGTTCCTAATTACTGCTCAGCTTAGAAACTGTAGCTAGCATGGTGGTGAGCTGTAGCTAGCATGGTGGTGAGCTGTAGCTAGCATGATGGTGAGCTGTAGCTAGCATGGTGGCGAGCTGTAGCTAGCATGATGGTGAGCTGTAGCTAGCATGGTGGTGAGCTGTAGCTAGCATGGTGGTAAGCTGTAGCTAGCATTGTGGTGAGCTGTAGCTAGCATGATGGTGAGCTGTAGCTAGCATGGTGGTGAGCTGTAGCTAGCATGGTGGTGCATGAGCTGTAGCTAGCATGATGGTGCTATAGTGCACAGGGACATCAGAAGTGAATTAATCTCTCAATGATAAAATCCAGGAATCAGACAAAATATCTCAATGAACATTCCGTAGAATGACACGCGTACCGCACAGCTTAACGAGCTCCTGACGCGAACACCTCGTAAGCAGATGTCCGGTAAACCGACCGAAACCCGCCAATCGGAATCTCAATAGTCCGCGGGCCCGGCTTCCTGCAAGGTGACACTTTCCGTGGTGGCATACAACCCTCAATCGAGGGCCTGAGATGCGATGCGCAAAATATGACATGTAATGGAGCATATCGTGTTAACAGAGACAGCCTCTGTAAGCGGGTAGTAAGACTGGGATGCCTTCCCGTTAGTTACGGACTATCCCCCTATTATTGGATATTAAATGTAATACGCTAGACGACACGTAGAACGAAGTTCATGACAAAATACACGTGAACCTGTGGAAAAAGGATCCTTTTTAGTAAGAATAATCATCTTTCCGTTAGTGTTAGTGGATCAGTTCACTACACAGGACTTTCTGTGGTATAACAAAGCTTCTACATTCAGTTGGTATCATTGATTTTATATAGGTGCCGCGTACGACATCGCAGTACTAACACAAGATAAATTGGCAAAACTGTGGGCACGGGTGAACAGTAGACTTCAGTGTAAACTTCTGTTTCAATTGTATATACAGACACGTTCTTTAGGGTAATGTAGAATACCGCAAAAAATGCCCTGCATAATGCTATACATTTATTATATCACAAATCACGGCAATATTGTAAGAACAATAACACGAATGGGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR012227	Family	TNF receptor-associated factor TRAF, metazoa	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0009898	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-