Gene detail

Detailed information of Acti_048579-T3 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_048579-T3	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	ScLC4GM_578	71296090	71326965	-

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_048579-T3

ATGGAAAGAGAGAAGACTGATACCCAAAGAACAGGCAAAGAAAGCAGTGATGCAGTTGGAGGCCTCATGTGGCGACAAGGAGAGCCCACGGATGTTGAATTGCAGGATTTGGCTGCCTGCTTGCCAAAGGACTGGATACCCGTGGGCTCAAAACTTGGGGTTGACCACTACAAAATCGAAGCGATTGAGATTAATTACACTGGAAATGTCCAAAGACAAGCATCTAAAATGCTATATTTATGGAAAGAGTCTGGGCCAAATCGATCCTACCAAGTGCTTGGAAAAGCGCTACAAGCATCAAAAAGAACCGATCTGGCCAAACGGTTCTGTGTGGCCAACACCAAACAGGAGCAACAAGACAGAATGCCAACTGATCAAACTGAAGAGTGGATATCGTCGTTGAAAGAATCCGTTAAAAAGCAAACAAAGTTTGTACCGAAGTTAGTGGACTCCCACATGATTGAAAGTGTGAAGACCGACGATATCTTCACCAATCTCGTCATACAACACGGGAGAAAGCCAGTAAAGGATGAAAACGCGAAAGGAACATCAAAAGAAAAGCTACTCAACTATAGCAAAGTTAGTGGAACTCCGATCAATCGGTGCGAACAAATCTTCTTCGGAAAAGAGAGAGATCAAGAAAATCCTAAATCGATCCTCGTGATTGGCAAAGCAGGGATTGGCAAATCTCTGTTTTGCCAAAAACTGCTTCGTGACTGGGCTTACGACAGGTTATTTGAAGTCGAAGCAAGTGCCCAAATTGATTTCAAGTTTGCATACCTCTTGACATTTCGACAGTTAAGTTTACTTGGAGAGAAAGCTCTTAATCTACGTGAAATATTAAACCTCTCAATGTTGGATAAAGATTCAATTATCGATGATTTATTATTCGAGTACATTCTGCAACACCCTAAGGAGGTTTTGATTTTACTTGACGGGTACGATGAATATTCACAACGAAATTATATTACCGGTATCTCAGAACAAGCCTACCCAAATGACCCTCGAGTTAACATGCCTGTACCGGCACTGATTGCCAAACTGATGAGAGGAAAAATCTTAAACAATTCGGTACTGTTGGTAACATCTCGACCAGAAGAAGCTGAGGAGCTGGGAGGAATTGACTTCGAGCAACTCGTGGAAGTTGGAGGGTTTTCTGAACAACAAGTTAAAGAATACATTGGAAAACATTTCACAGCAAATGAATCTAAGAAAAACACTGTACTTGATCATATCATGAAGAATAAATATCTGGTAAGCTTTGCCCACGTTCCTGTCCTCTGTTTTCTAATGTGCTGGTGCATGGACCACTACATTGAACAAGAAAGCAGTGGAGATCTTCCTGTCACCATAACTGAACTCTATTCTGAAGTTATTAAAATCTTTGAACTAAAACATCACAACCTGGGCGAGTATAAAAAGAAGGGATTTCTTAAGAAGCTCAAGACTACACCTCTGGTTGAAGAAACATTAAATAAAGTATCAGAGTTGGCAGCGAAATTGCTTTTGGAGAAAAAATATATTTTTGAAGAAGAAGATATGACTAAATACAAACTTTCACCTGAAGAAATCCAACAGCTGAAAGCGAGCGGTCTTCTTCATTGTGGTCCTCAAATGGCTCAATCTCCTATTGAACTCACAACGGAGTTTTGTTTTATCCATTTAACACTTCAAGAATACTTTGCTGCTCGTTGGTTTGTGAAGGAAAAACAAATACCAACAGTAGATAATATGTCTTCCATGCCCATGGTCATCCAGTTTATGGCTGGGATTATGTCAGAGAAAAAAGATGACAAACTGATGCAAGAATTATTGGATAAACTGCCACCTGATGAACAACACTCAACTAGTAAACTACTTCTACGAGTAAAGTGTCTAAATGAATACAAAGACAAAGAATTCGCTAGAACTATTGTAAATAAAGAACACCAGCTGTACTGTAATGAGGGGTGGATTAGTTTTAATAACCTAACTGATGTGGACTGTATTGCAATCTCCTTTTTGTTAGATATTTTCAGTTCATTGTATAAAGAGCAAACTACTAAAAAACATTCATCATCATCTGCACAGTTAGTTAATGTTAATGCATTGCACATCATTATATCACCTTTAACATTGTGTGGAGTAAAACGTGTATGTCAATCACTGGAGAATGAATTCTGTACCGTAACTGTACTGAGGCTGTGGAAGTGTGAATTAACTGACGAGTGTGTTGAGTGCTTAAGTGAATTAATAACAAGTAAATTAACTACACTACATCTGACTGATAATAAGATAACTAGTGTTGATAATATATGTATTGCACTAACACATCCCAGCTGTAAATTAACTACACTAGATCTGCCTATTAATAAGATAACTATAGTGTTGATAATATATGTACTGCACTAA

Transcript

Acti_048579-T3

ATTTTACACAATAACTTAGGCCTGGTTTTCAAGTAAAAATAATTTGTATTGTTTTTTAAAACTATTGTGTGGTAGGGATTTTATTTCAAATGGTATTTTTTCCCATAATCGTGATGCAAGAGATTTAAATCTCGATAGACCATAATTAGTTCTGGAAGCTGTCCATCCCTGTCGTGATATGGAAGTACGAGGTTTTTTCAGTGTTCGGTGCTTAGTTTGGGTGATCGATGAGGTTTTACCAAGACGCTACTCTGAATCAATAACGTTGTATGTGCTACGTGCATCAGAATTTTAATCAGCTTTGTATCCGTTTATTCTACAGTTGACACACGATGACATTTCATTACTTCGAAACAGACAAAAGATTTCTACAACATTGACTGGTGTTTAATCTTGTCAACAAAAGCCGACAAACGATGACATCTCAGTATTATGAAACACAAAATATTTCTTAAACATTGACTGGTGTTTATTCTTTTCAACAAAAGTATGGAAAGAGAGAAGACTGATACCCAAAGAACAGGCAAAGAAAGCAGTGATGCAGTTGGAGGCCTCATGTGGCGACAAGGAGAGCCCACGGATGTTGAATTGCAGGATTTGGCTGCCTGCTTGCCAAAGGACTGGATACCCGTGGGCTCAAAACTTGGGGTTGACCACTACAAAATCGAAGCGATTGAGATTAATTACACTGGAAATGTCCAAAGACAAGCATCTAAAATGCTATATTTATGGAAAGAGTCTGGGCCAAATCGATCCTACCAAGTGCTTGGAAAAGCGCTACAAGCATCAAAAAGAACCGATCTGGCCAAACGGTTCTGTGTGGCCAACACCAAACAGGAGCAACAAGACAGAATGCCAACTGATCAAACTGAAGAGTGGATATCGTCGTTGAAAGAATCCGTTAAAAAGCAAACAAAGTTTGTACCGAAGTTAGTGGACTCCCACATGATTGAAAGTGTGAAGACCGACGATATCTTCACCAATCTCGTCATACAACACGGGAGAAAGCCAGTAAAGGATGAAAACGCGAAAGGAACATCAAAAGAAAAGCTACTCAACTATAGCAAAGTTAGTGGAACTCCGATCAATCGGTGCGAACAAATCTTCTTCGGAAAAGAGAGAGATCAAGAAAATCCTAAATCGATCCTCGTGATTGGCAAAGCAGGGATTGGCAAATCTCTGTTTTGCCAAAAACTGCTTCGTGACTGGGCTTACGACAGGTTATTTGAAGTCGAAGCAAGTGCCCAAATTGATTTCAAGTTTGCATACCTCTTGACATTTCGACAGTTAAGTTTACTTGGAGAGAAAGCTCTTAATCTACGTGAAATATTAAACCTCTCAATGTTGGATAAAGATTCAATTATCGATGATTTATTATTCGAGTACATTCTGCAACACCCTAAGGAGGTTTTGATTTTACTTGACGGGTACGATGAATATTCACAACGAAATTATATTACCGGTATCTCAGAACAAGCCTACCCAAATGACCCTCGAGTTAACATGCCTGTACCGGCACTGATTGCCAAACTGATGAGAGGAAAAATCTTAAACAATTCGGTACTGTTGGTAACATCTCGACCAGAAGAAGCTGAGGAGCTGGGAGGAATTGACTTCGAGCAACTCGTGGAAGTTGGAGGGTTTTCTGAACAACAAGTTAAAGAATACATTGGAAAACATTTCACAGCAAATGAATCTAAGAAAAACACTGTACTTGATCATATCATGAAGAATAAATATCTGGTAAGCTTTGCCCACGTTCCTGTCCTCTGTTTTCTAATGTGCTGGTGCATGGACCACTACATTGAACAAGAAAGCAGTGGAGATCTTCCTGTCACCATAACTGAACTCTATTCTGAAGTTATTAAAATCTTTGAACTAAAACATCACAACCTGGGCGAGTATAAAAAGAAGGGATTTCTTAAGAAGCTCAAGACTACACCTCTGGTTGAAGAAACATTAAATAAAGTATCAGAGTTGGCAGCGAAATTGCTTTTGGAGAAAAAATATATTTTTGAAGAAGAAGATATGACTAAATACAAACTTTCACCTGAAGAAATCCAACAGCTGAAAGCGAGCGGTCTTCTTCATTGTGGTCCTCAAATGGCTCAATCTCCTATTGAACTCACAACGGAGTTTTGTTTTATCCATTTAACACTTCAAGAATACTTTGCTGCTCGTTGGTTTGTGAAGGAAAAACAAATACCAACAGTAGATAATATGTCTTCCATGCCCATGGTCATCCAGTTTATGGCTGGGATTATGTCAGAGAAAAAAGATGACAAACTGATGCAAGAATTATTGGATAAACTGCCACCTGATGAACAACACTCAACTAGTAAACTACTTCTACGAGTAAAGTGTCTAAATGAATACAAAGACAAAGAATTCGCTAGAACTATTGTAAATAAAGAACACCAGCTGTACTGTAATGAGGGGTGGATTAGTTTTAATAACCTAACTGATGTGGACTGTATTGCAATCTCCTTTTTGTTAGATATTTTCAGTTCATTGTATAAAGAGCAAACTACTAAAAAACATTCATCATCATCTGCACAGTTAGTTAATGTTAATGCATTGCACATCATTATATCACCTTTAACATTGTGTGGAGTAAAACGTGTATGTCAATCACTGGAGAATGAATTCTGTACCGTAACTGTACTGAGGCTGTGGAAGTGTGAATTAACTGACGAGTGTGTTGAGTGCTTAAGTGAATTAATAACAAGTAAATTAACTACACTACATCTGACTGATAATAAGATAACTAGTGTTGATAATATATGTATTGCACTAACACATCCCAGCTGTAAATTAACTACACTAGATCTGCCTATTAATAAGATAACTATAGTGTTGATAATATATGTACTGCACTAATACATCCCAGCTGTAAATTAACTACACTAGATCTGTCTGGTAATAAGATAACTAGTGTTGATAATATATGTACTGCACTAATGCATCCCAACTGTAAATTAACTATACTAGATCTGTCTGCTAATAACATCACTAATGAAGGTAAACAATCTCTGCGTCTGGTAAAACGACAAAAATCCAATTTTGTTCTTATCTTGTGAACTGAAGATGAATGACTGACAAAACAGTAACAAACCTTGTTGTTTTAATGCTGATATTTATAACAAAGTTAAACAGCTTTATAAATATCAATTCATCTCTCATATTGAGTAGGTTTTCATATTATTCAATTTACATTTCTGGCGGGTCTTTTAGTTTTATCGAGAAAAAGATACCAAACTATGTCAGCCTTTGTCAATATAATTGACAGTAGATATTGAGTAATTTGTGTTCTGTGTATTTATATACTTATTGAACTGAACACAAAAGGAATGTGAATAAGAATCATTTGATGTCAAAATATGGATTAAAACTGATCTACCAGAGATTACTCCAACTAAAAACACATTCACACAACTCAGTTGTTATAAATTCAAATCATTTATTTATCAGTCGGGTGTAGTTACAGTAGATTGACATGTTTTGTGGTTAGTTAATAAAGATGTAAATATATTTTTGTAGATAAATCAATGTTTTCTCCAAGTGTAAAGGAATCTTTTCAACAAGTGAAGTCTGAAGATATTTGGAGGAACTGACTCAAGTTAGAATAGGCGGTGGAGTTAAAAGCCTTATTTTTTCCTCAAAACAATGATTTTGTAAAAAATGAAAGAAGTCAGAAAGATAAGGCATTAGTGTCAAGTATTTCATTGATGAAATAGTGATTTGACTTGGTTTTCTCAAGTGCGAACTGAAAACATCGGTTTGGTTTCGTATTAAATGGCGAGAAAAGAAATCTCTGATCAAAATAGTTTCTCGATGACTGAAGTCTGAAGAGCATTCACTTTTAAACTGCGTTATGTTCTAGACGGCTGCTCTATAGACTATAGTGAAAAACCTCTTGCAAGTTGAAGGACTGAATTGTTTTATCAACTACTGAGTACTGGAACTCCATAAAATATGTCATAGGTTTGACATAACTCATAAGGTCCGCTTTTTCTTGCCGCCATTCGCAAGTTTTTACACTTCACTTTTCAACAGAAATGTCATGTTATCTATATAGAAAGGTAGCTTAAGATATTATTGTTCTCTCAGGTAAAAGAACATTGTAAATATTAATTGTAGTTTGAAAATATAAAAGAAAACGTATTCCTACATGAACGCGACTGGAAATAAATTTAATTGAGCTTGAGACCGAGAGAGAAAACAAGTCGAATTCTACTTGGTCAAGCAACACCAGATACTTTAAAATTCCTATTCTCATTCACAGTAAGGTGAAGCAGTTTTCCTTTTAAACTATTCAATGCATCAAATTCACTAGAATCTGCAAAAACAACAACAGCAATGTGAGTACAGCTAACCTTTACGCTTCAACGCTTTACAACCTCGAGCCTGCAAGAGAATGGGAATACTAAAACACGTTTTGCAATTCTAAAGGCAGGACTAAATCAAATTCAAAGTATCTGGTGTTTTCTTGTCCTTGATATAGTTCTCCTACAGGGTAGAAAACAGTAAATGAGGACAAATTACTCCATAAATGAATAAATAAACGAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan
PF17779	NOD2_WH	NOD2 winged helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR041075	Domain	NOD2, winged helix domain	Interproscan
IPR050637	Family	NLRP family, innate immunity and inflammation regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45690	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-