Gene detail

Detailed information of Acti_048410-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_048410-T1	EGF-LIKE DOMAIN-CONTAINING PROTEIN	ScLC4GM_44	1462210	1486328	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_048410-T1

ATTGCCAGACAGAGATCAATGAGTGCTCCAGCAACCCTTGTCAGAATGGTGGCTCCTGTGTGGACATGTTGAATGGTTACAATTGTACCTGTGCTGCGGGTTATACTGGAATCAATTGTCAGTTAGTGTTCCATTGTTCCATTGACCCTTGTCTTAATGGTGGATCGTGTAAGGAGCAGTTGGATGGATACAGATGTACATGTCCAGCAAATTATTCTGGATCAAACTGCCAGATAGATGCCGCCATTCTAGCTCACTGGATGCTGGATGGAACAGATTCTAACATGATTCTTGTTGGTGGGCCAACATTTGGAAAAGGAAGGTATCCAGGAAGTAAAGCTATCAATTTCAATAAGAATTCTGGTTGCTATGCAAAGGTGCCTAAAGTTGAATTACGAGGAAGAAGCTTTACCATTGCATGCTGGATAAAATCGATAAACACCCCTGGTAAATATCAAGTCATCTTTAGCGACTGGTATGCTCCATGGCAGTTTCATTTCGTACTTGAACCGAATCGGAGACTTCATTTTGGACGGCACGGATTGGACGGATCTTGGCATGGTTTTGGTAACACAGCAAACCGTGTTGTTCCTGTTAATAGCTGGTGTCACGTTGGGATCACGTGGGATCAGTCCAAGGGTGTCGCCAAGTTGTTCCTCGATGCTACTGAAATAGCACATGATACGTTTGATCCAGGATTAGCTTGGTTTTACCCAACAAAAGCAACGTATGAAATTGGTGATGACGGACATTGGACCAATAAACAGTTTCACGGTTCAATCATGGATTTCTATGTTATAAACAAAGCGATAACCAGTGAAGAGCTGAATAACCTTAGAGGTTTTCCCAAATTCACAATGGCACCATTAAACAACAGCTTCATCTACGAGAATGAGACATTGGTATGCCGAGCTATCGGCCTTCCTACTCCCTACGTGGCACTGATACAGTCAAGAGTGGTGTTAGTCAACCAAACCTCTGCTGCTAATGTGAAGGTCAGCCAATATGGTGAACAGTACACATGTGTTGCTACGAACAACTTAGGAAGTGCAAAGCTAATTATAAAGGCTAAACGAAAGAGCGAGTGTTATAGCAACCCTTGCCAGAAGAACATGATTTGCACAGAACAGTTGAAGGGCTTCACTTGTAGCTGTGTAGCGGGTTATACAGGAACCAACTGTAGCATAGATATTAATGAGTGTTCTAACAGCCCTTGTCTTAATGGTGGTTCTTGTACGGACCTATCAAATGGATACAACTGTACTTGTGCTGCGAACTATACTGGCATAAACTGTCAGATATTAGTTCTCTGTAAGGCTGATTGGAAGCCGTTTAACGGTTCCTGTTATAAATATTTTGACACCCAAATGACCTGGAGCAATGCCAAAACCCAGTGTGAGAAAAATGGTTCAACGCTGGTTTCCATTCACAGCGATGAAGAAAATACATGTATCACTACCTTCAAGCAATTCAAGCCAAGAGTCTGGATAGGATTGCACGATATCAATCGTAAGGGTACGTTTCGCTGGGTCGATGGTTCAGCAGACGATTATGTCAACTGGCGCCCAGGACAACCAAATCGTGGCAACGAATTGGCAGTTGAAATTAACCGTGTTGACAAAAAATGGGATGATTATCCAACGTCATTCCTGTTTCCATATGTCTGCAAGTACACACCATGATTGTTTTAAGAATTTAGCTTGAAGCATTGAAGGGGTGCAGTCAAAAGAGTTTTTGAAATGATAATAGATTATTATTGTTTACCACAAGCCGAGTCTAAACCAAACTATGCTCAAATAATGTAAACGAATCACACATCTGGCAAAACGTGCAAAAATAAAAATGGAAAATGATGTTAGATCGCAACGGCTAAAATTAGGATAAAAAAATCGTCAACCAGCGTCATTTAAATAACTGCAAAAAGTAATTTGTGTCATTTTCTTAACTGTTCCATCCGAAACATAATGTAATAAATGTCAAAGTACTAAATTAAAAGTTGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051830	Family	Neurogenic locus notch homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24033	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-