Gene detail

Detailed information of Acti_048144-T2 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_048144-T2	TRANSLATION ELONGATION FACTOR-RELATED	ScLC4GM_19	21655125	21687853	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_048144-T2

ATGATGGCTGAAAACAGGATTGAAAAGGATACTTCGATTGGCCCTGATAGCACAAGAACATCGTCTATGACAAATGATACATCCAACAACGATGAGGACCAAGCATCTCCAACAACTCATTTCATGGCCTTCGCCAGGGTCTATAGCGGGACGATCAGGAAGGGCCAACACCTCTATGTATTGGGTCCCAAGCACGACCCAAGGAACCTTATGGAGGAACACGTAGCGTCGCTATCTGATGAGGATGATGACGACAATGGAAGGAAACGAAACGAAGGTCTGTCGGTGGCCAGGTCAGTTGACCGAGGTACGGACCAGCACGTGGCGGTATTTACTGTAGACGACCTGTACCTTCTAATGGGGCGAGAACTAGAAAGTCTGAAGTCCGTGCCCGCCGGCAACGTACTTGGGATAGGAGGGTTGCAGGATCGTGTCCTGAAGTCTGCCACGATAGCTAGCACGGTAGCGTGCCCACCGTTCACGGCCCTGCCGATAGAGGCACGTCCTATCGTGCGTGTAGCTATAGAACCTGTACATGCAGCCGACATGCCTGCTCTTGCCAGAGGAATGAGACTTTTGAATCAGGCGGATCCGTGTGTGGAGACATTTGTGCAAGGGACGGGCGAGCACGTGATAATAGCGGCAGGCGAAGTTCACCTTCAGAGATGTGTCGACGATCTCAAGGAGCGTTACGCATGTGTACAGCTGAACGTCTCGGCTCCCATCATCCCATTCCGTGAGACCATTGTTCTTCCTCCTACAGTAGATATGGTCAACGAAGTGATAATAGGAGAGTCCAGTGGTCAACAAGTGAAACAAATGTTCTCCGAACTTGAGAGTGACGACGATACCTCAAAAATCCCTTCTATCAAAAATAAGCTATTGGTGGAGATCAAAACTGCTAACAAGCAATGTACGATTCACATCCGGGCCACACCACTACCACAGCAAGCTGTTCAACTATTAGACAAGAACACGGAGTTAATCAAACTGCTGACCTCCGGCCCTGGTACCACGGGCTCGGACAAGAAGCAACCTTCTCAGTTGAAGGGTTCAACAAGGGAGCAGATACAGGAATTCTATAACGAATTAGGAAACGTGTTTCACGAGGCGGGCAGTGATTGGGAGGAAGTTGTGGACCGGATCTGGGCATTCGGACCTAGAAGGACCGGACCTAATATTTTGCTGAACAGGATTCCGGACTACAAGCGTCCATCCATATGGCAAGGTGTTAATAAGCAAGATACCAAGACAAGCGACAGTCAATACAGGAGTTACGACAACAGCATTGTGAGTGGTTTTCAACTGGCTACGCTGGCGGGTCCGCTATGTGAAGAACCGTTAATGGGTGTGTGCTTTGTTATTGAAAACCTCGTTATGAATGAGCATCAAACTGGTAAGACTGGTTCTGTAGATGATAAAACCGATTTAAAGACGATTCCCACCTCTCTGGAGAATTATTGTGTAAGACTACATTTGAAAGGTGAAGAGTCGGTTATGAATTCTGAAATATCACATAAAAAAGTACAACCGCTTAGTGAAAAACCTGGCTTGTCAGATATGTTGGTATCTTCGAATGAACAAGTTGAAAGTGAAGACGAGAAAAGGTTTCCAAGTAAAGAAAGTACCGGATTATCGAGTTCTAGTTTTAAAGGAGACTCCGGCCATTGTAAGTTTAATATTTTGATGGACGATAAAGCTGTAAATGAAGTCAAGGTTGATGATTTGCTAAAGGAAAACAGCGAAGAGAGTCAGCAGAAAACTGTAGGAGACGAGCCCTTGAAATATGGCGCTGATAACAGTCTTAATACAGAAACTGTTAAAACCTCGATAAAGAAAACTGAAGAAATTACAAAGATTGTGAAAACAAGTCTGGAAAGCGATTCTGTTGATGGAGAATTCGATGGTATAAGCGAGAGAAGAAACTTTGCAGGAGAATTAAGAGAAAATCAAGACTGTTTGAGAACAGGTCAAGTTGATAAAGAAAAGGAACACTTGCCCAAACAACTTCCACTTTCAAAAGAATTGACAGAGATATCTGTAGTGTTAGATGCTGGTGAGAAATACGAAACTGGACAGTATCAGAAAGAAGATCAAACAGAAACAAGAGAGAGAGAGAAATGCTCTGAAAGCAAAAACAAGTCTAGACAGCAGGTCAACAGGCTTGATCGGTGGGGCCCGTTTTCTGGCCAGATAATGTCGGCCGTCAAAGAAGGTTGTAGACGTGCTTTTCAACTACAACCAATGCGGCTCATGGCAGCCATGTACACGTGTCATATCCAGGCCACTTCGGACGTCCTGGGGCGAATGTACGCCGTCATAGCAAAGCGTATGGGACGGGTGCTCAGTGAGGAGATGAAGGAAGGCTCGGACGTGTTTGATGTCGAGGCTGTGCTTCCTGTGGCCGAGAGTTTTGGATTTGCTGAGGATATTCGTAAGAGGACCAGTGGAGTGGCTAATCCACAGCTTGTTTTTAGTCACTGGGAGGTGGTAGATATGGACCCGTTTTGGGTCCCCACCACAGAGGAGGAGTACACTCACTTTGGGGAGAAGGCTGATTCTGACAACCAGGCTTGTAAATATATGAACAGCGTTCGACGCCGTAAGGGACTGTATGTCGATGAGAAAACTGTGGAGCATGCCGAAAAACAGAGGACACTGAAAAAATAA

Transcript

Acti_048144-T2

AGGCCATTAACACAAGATGAACTAGCCCAGCGCCGCCAGCAGGCGAGACAGAAGCACGCTCAAATGATGGCTGAAAACAGGATTGAAAAGGATACTTCGATTGGCCCTGATAGCACAAGAACATCGTCTATGACAAATGATACATCCAACAACGATGAGGACCAAGCATCTCCAACAACTCATTTCATGGCCTTCGCCAGGGTCTATAGCGGGACGATCAGGAAGGGCCAACACCTCTATGTATTGGGTCCCAAGCACGACCCAAGGAACCTTATGGAGGAACACGTAGCGTCGCTATCTGATGAGGATGATGACGACAATGGAAGGAAACGAAACGAAGGTCTGTCGGTGGCCAGGTCAGTTGACCGAGGTACGGACCAGCACGTGGCGGTATTTACTGTAGACGACCTGTACCTTCTAATGGGGCGAGAACTAGAAAGTCTGAAGTCCGTGCCCGCCGGCAACGTACTTGGGATAGGAGGGTTGCAGGATCGTGTCCTGAAGTCTGCCACGATAGCTAGCACGGTAGCGTGCCCACCGTTCACGGCCCTGCCGATAGAGGCACGTCCTATCGTGCGTGTAGCTATAGAACCTGTACATGCAGCCGACATGCCTGCTCTTGCCAGAGGAATGAGACTTTTGAATCAGGCGGATCCGTGTGTGGAGACATTTGTGCAAGGGACGGGCGAGCACGTGATAATAGCGGCAGGCGAAGTTCACCTTCAGAGATGTGTCGACGATCTCAAGGAGCGTTACGCATGTGTACAGCTGAACGTCTCGGCTCCCATCATCCCATTCCGTGAGACCATTGTTCTTCCTCCTACAGTAGATATGGTCAACGAAGTGATAATAGGAGAGTCCAGTGGTCAACAAGTGAAACAAATGTTCTCCGAACTTGAGAGTGACGACGATACCTCAAAAATCCCTTCTATCAAAAATAAGCTATTGGTGGAGATCAAAACTGCTAACAAGCAATGTACGATTCACATCCGGGCCACACCACTACCACAGCAAGCTGTTCAACTATTAGACAAGAACACGGAGTTAATCAAACTGCTGACCTCCGGCCCTGGTACCACGGGCTCGGACAAGAAGCAACCTTCTCAGTTGAAGGGTTCAACAAGGGAGCAGATACAGGAATTCTATAACGAATTAGGAAACGTGTTTCACGAGGCGGGCAGTGATTGGGAGGAAGTTGTGGACCGGATCTGGGCATTCGGACCTAGAAGGACCGGACCTAATATTTTGCTGAACAGGATTCCGGACTACAAGCGTCCATCCATATGGCAAGGTGTTAATAAGCAAGATACCAAGACAAGCGACAGTCAATACAGGAGTTACGACAACAGCATTGTGAGTGGTTTTCAACTGGCTACGCTGGCGGGTCCGCTATGTGAAGAACCGTTAATGGGTGTGTGCTTTGTTATTGAAAACCTCGTTATGAATGAGCATCAAACTGGTAAGACTGGTTCTGTAGATGATAAAACCGATTTAAAGACGATTCCCACCTCTCTGGAGAATTATTGTGTAAGACTACATTTGAAAGGTGAAGAGTCGGTTATGAATTCTGAAATATCACATAAAAAAGTACAACCGCTTAGTGAAAAACCTGGCTTGTCAGATATGTTGGTATCTTCGAATGAACAAGTTGAAAGTGAAGACGAGAAAAGGTTTCCAAGTAAAGAAAGTACCGGATTATCGAGTTCTAGTTTTAAAGGAGACTCCGGCCATTGTAAGTTTAATATTTTGATGGACGATAAAGCTGTAAATGAAGTCAAGGTTGATGATTTGCTAAAGGAAAACAGCGAAGAGAGTCAGCAGAAAACTGTAGGAGACGAGCCCTTGAAATATGGCGCTGATAACAGTCTTAATACAGAAACTGTTAAAACCTCGATAAAGAAAACTGAAGAAATTACAAAGATTGTGAAAACAAGTCTGGAAAGCGATTCTGTTGATGGAGAATTCGATGGTATAAGCGAGAGAAGAAACTTTGCAGGAGAATTAAGAGAAAATCAAGACTGTTTGAGAACAGGTCAAGTTGATAAAGAAAAGGAACACTTGCCCAAACAACTTCCACTTTCAAAAGAATTGACAGAGATATCTGTAGTGTTAGATGCTGGTGAGAAATACGAAACTGGACAGTATCAGAAAGAAGATCAAACAGAAACAAGAGAGAGAGAGAAATGCTCTGAAAGCAAAAACAAGTCTAGACAGCAGGTCAACAGGCTTGATCGGTGGGGCCCGTTTTCTGGCCAGATAATGTCGGCCGTCAAAGAAGGTTGTAGACGTGCTTTTCAACTACAACCAATGCGGCTCATGGCAGCCATGTACACGTGTCATATCCAGGCCACTTCGGACGTCCTGGGGCGAATGTACGCCGTCATAGCAAAGCGTATGGGACGGGTGCTCAGTGAGGAGATGAAGGAAGGCTCGGACGTGTTTGATGTCGAGGCTGTGCTTCCTGTGGCCGAGAGTTTTGGATTTGCTGAGGATATTCGTAAGAGGACCAGTGGAGTGGCTAATCCACAGCTTGTTTTTAGTCACTGGGAGGTGGTAGATATGGACCCGTTTTGGGTCCCCACCACAGAGGAGGAGTACACTCACTTTGGGGAGAAGGCTGATTCTGACAACCAGGCTTGTAAATATATGAACAGCGTTCGACGCCGTAAGGGACTGTATGTCGATGAGAAAACTGTGGAGCATGCCGAAAAACAGAGGACACTGAAAAAATAACTTGTTCACCTGGTGAACAATGATTCACTGTTCAGTCAGTTGATAAACTATTGATGAGACGCAACTGATGAGAAGCCTGGAGTATGCCGAAAAACAGAGGACACTGAAAAAATAACTTGTTAATCTGTTGACCAATGATTCACTGTTCAGTCAGTTGATGGACAAGTAAAACATTACCCGCAGCATCTTAAAGACAAGAAGATAAAGGCGACAACTAGGTTGGCTGAAGCCGTGTTATGTAACATGGAACCTGCTCGTATTTTATGAAGGCAGTAAAATTCATTCTCCAAGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00679	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF14492	EFG_III	Elongation Factor G, domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000640	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR035647	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR041095	Domain	Elongation Factor G, domain II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42908	TRANSLATION ELONGATION FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0042256	Biological Process	cytosolic ribosome assembly	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-