Gene detail

Detailed information of Acti_047890-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_047890-T1	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	ScLC4GM_1681	39458439	39460670	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_047890-T1

GCGTCCTTCGTTAAATACAACTCGACAGTTCCGTCAAAAGAAAATATTTTTCTCACCGAAGAAGACATCCCAGGAGCTAAACTTCCACGGGAATCAATAGTCGAATGTAGCGTGGTTCAGTTGAGAAGATGGCTTCTGTGTAGAGGAGCAAAAACTTCGGGGAAAAAGGCCGTTTTGATCAGCAGGTAAGATACTTCGATCGATCTCATGTACCAGCACGACAAGTTTATTAAATACTGGATATTTTAGCATCGATTCATACAAACTAATTGCTTATCTCCGTTATTTTATAGGGTGCAAGACTACATAAAGAATGGATTGGATACCAAATACTTGCGAGACCCAGATGGAGGTATCAATTTGTTGAGGAAAAAAGCACAACTTGGCGTCCTTGACAACGTAGAACCCGAGCCTTCTCAAGCGTTTCCAAAAGAAGGTTTTATCTGTGATCTCAGTGGCATTCCCAGAGTAACGTTCGGAACCATCTGGAGATATATGATTGACTGTGTTGAACTCAAGAAGCAGCTGTCTACCGCCAAGCCTTTGGTTAAAGGTTATAATTTCTATAAATCTGGACATGTTCTATTTATCAGTCACTTGGCTGAGAATGGTAAACACTACCTAAAAAGTCAAGTTATGCCGTCTATGAAAAAGAACCCTGTCTACACTTGCTATTTTGTTATGACATCAATTGGTAATGTATTAAGAGCCCAATGTGGATGTCCAGCAGGTGTTGATGGTCGGTGTAACCATGTGACAGCCACCATGTTTGCACTTGAAGAATACTGCAAACAGAGAGTAAAACTTCAAGCTGCTGAGTCTTCTGAGGTATCATGTACATCAAAACCATGCAAGTGGAATGTTCCACGCAAACGGAAAGGTAATGTCACATCAATTGGAAATATCGCATTTGCAAGACATGACTACTCAAAGGAAAAGAAAAAGAGAAAGTCCTTTGGAACCCCTGGCCATGATGTAAGAGCTCTACACCAGAGAACATGGTCAGACGACAAGGTTAAAACTATGTTAAATCTTCTGAAGGATTATCAAGAAAAATCTGGAAAAGAAGTAGGATGGGTACATGTTCTACCACAAGATGTGGAGCCAGCAGACAAAAGTGATGACCTTAACAACTCTGAATCAAATGGTGAATTATTGTCCCCAATAAAAGAACAACCAATTGCTGCCTCTACAATTAAAGAAAGATGTGAACAGGTGCGAAGGAAGCTAAATGTGACTGAGCATGAAATCACAGATGTTGAAAAAATGACCAGGGGCCAATCAAACAACAACATTTGGTATGAGCAGAGGAAATACAGAATAACTGCTTCAAAATGTCATAGAATTGCTACAATGAGGGACACTACATCCCCGACTAAAGCTATTCAAGAGGTTTTGCAATACAATGTGCCTTATCAATCCAAGAGTATGAAAGAAGGGATTGAACAGGAAAGCAGTATCTTGGAAAAATACAAGCTATTAATGTGCGAAAAGGGGCACAATGATCTTAGTGTCAGTCAGTGTGGGTTCTTTATTAGTAAGGAACATGGTTTTCTTGGTGCGTCACCAGATGCCCTAGCTGATGATCCTTCATTCTCAGATCAAAAAGGACTTGTGGAGATTAAATATATTCAAATGACTGAACATGAAAGTTTGTGTGATTCTCTACTGAGAAAAAGAATCTGCTCAAGAAAGAATGATGACATTGAACTGAACACTAACCATCAGTATTACTATCAAGTACAGCATCAAATGTATGTCACTAATAGGAAATGGACAGATTTTGTTGTCAGTGGGTCGAGAAGTAATTCTCTCTTCTGCCAGAGAGTATTTTTCTCTGAAGAGTTTTGGAATGCAATATTTCCAAAATTGTGTTCCTTTTTTCAATGGTGGATTGCTCCTGAAGTTGCATATCCAAGGATAAAATTTGGACTTCCCAAGTTAGATTTTAGATCTTTGTGATAAAGTGAATTTCATTTAACCCGTTATTTAATAAATAGATATTATAGTCAAAATATACCTTAGTAGACACTAGTTCCATTGTTTTCTATTGTTTGGTATTGACTATTAGATTTTGTTTCACGGGTTATATAAAATCTCTCTACATTATTGTATTTAACACTATTTTTACTAATAATATCGTAAGTTAAAATCATTGTAAGGGCTATGCACCTTTCTTGTGAATCAAAATAAAGTAAACAAACAGTACATTTTGATAAAGATTGAATGTCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001616	Family	Alphaherpesvirus alkaline exonuclease	Interproscan
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR019080	Domain	YqaJ viral recombinase	Interproscan
IPR051703	Family	NF-kappa-B Signaling Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46609	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004527	Molecular Function	exonuclease activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-