Gene detail

Detailed information of Acti_047328-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_047328-T1	RAS-RELATED PROTEIN RAB	ScLC4GM_1591	37484077	37529772	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_047328-T1

AAGAATGGGAAGTATTGCGAAAGCTCGATCACCCGAACATTGTAAGAATGCTTACTGTTTTGTTTCCGACTTCGAAGAATCAGTCACCGGTGATTGTGACTGAGTTACTGCATTGTGACTTGGAAAAATATATCAGGAATTCTGAAACGATTCCTAAGATTGGCCAAAAGGAAGGCCTGTCTTTAGCCCTTGGCGTTGCTCAAGGTTTGCAGTATTTACACGGCTTGAAACCAGCTCCTGTCGTTCACCGGGACTTGGCGACGAAAAATATTTTGCTCACTAAAGAAAAGCAACCCAAAATTGCAGACTTAGGAGTTGCTAAAATATTCGCTTCAGGGAAGGATATGCACGCCACACCATCGCCTGGTACCCCTCTGTATGCTGCTCCCGAGATCCTTCCTACTTCTATGGGCCAGGAGGCCACTATGAAGTACGGTGTGAAGGTGGATGTTTTTTCGTTTGGTGCTATTGTTTTGGCCATCATTGTTGGACATGAACCAGCCATCTGGCCTCTCAGCCATCTTAACGAAGATGGTAGTAAAATCAGTGAGTCAGTTCGCAGAAAGAATGATATCGAAGAAATGGGACACAACAAGATGAGGTCGGTGGTCCTTAGATGTCTGAAGGACAGAAGTTGTGATCGACCAGATGCAGCAAGTATTGTGCGAGAGCTTAAGGATACAAGAGACACGCTAGACACCTCGTCCCGCAACAGCATCAAAGTACAAGCAGGCACTTCAGGTTCATCTGCAGGATTAAAAAGGTTACCTATTGCTCCATTTAAAGTTAAATTTGACAGAGTTCCACAACGGCCTCACTATGACTTCAAATTCAAAACCCTATTCCTTGGTAATGCAGCTGTTGGCAAGTCGTGCCTGTTTCAGAAGCTTAACAACCCAGGATTTAACATTAAAATGACAACGGCTACTATAGGCATCGATATCGACAGGGCCCACTTCCAATATGACACCAAATTTGTTCAAATGATGATCACAGACACAGCTGGTCAAGAAGAATATTTTAGTATTCAGCGAATGTATTTTCGTGGTGTCCATGGCATATTCCTAGTCTTTGATCTCACGCGCGAGACATCGTTTTTGGGGTTGCATCGCTGGATCAACCATATTGAAATACATGGCTCGGATGCAAAGATTTTGCTTGTAGGCAATAAAGTGGACAAAACTGAAAAAAGACAGGTTCCAGAGCCCATCGCAAGAAATTTCGCTATTCGCAACGGGTTTCCATATGTTGAAACCACTCTAGATGATGATTATGATCCAGGCTTACCCAGTCTCATGAATATGTACAAGAAGATCACACGAATGCTTATTCAGGCAGTAGACATTGGGGAGATTCATCTTCAGGTGCCTGAAAGCCAGATTACAGTCAAACAACAACCGCCAAAGCAAAAGTCGAAATGCCCATGTTAAAAGTCCCGAGAGAGAGGACTAATGTCAAGAACAGTTTTTTGATTTATTGTGCATTCGACCTGACAAAAAGTTGTGGTTCCTGCGTTGAATTTTGTAAGTCATTACCTAACCTGCGCAACGGGCACTGTAAAAACGACAACTACCAAAATACATTCTCGACTCTGTACTTCGCTGTTAAATAAGCAAAATAATAATGTAAATGAACTGATTTACAAGGAAAACAGATTGCGATAAATATCTGAAACATTTTATTAACCGCGTCCTATAGGCGACGAAATATCGGATACTCAAAATCGATTTCTATTATCAATCTCCTCCCCAAGCCGTGCTAACTGGTGATCCAGTGAGTGAGAGAGCTTCCCCATTGCGATAACTCGTTTCTGCCCATGCGCGCTTCCACGAGTTAAAAAGGGGAGAGAATTGAGGTTTCCTTCCCTGCCCAGTATATTTCATTGCAATGTATTTCATTTTTTTATGTACGTATTTGTAGCGTATTTTACATGTCAAGTTTACTTAGGGTATTTCGAGGTCGTCACGACCTAAAAAACCAAGGCCTAGTAACACCGTTATGCTTTGAGAAAGAGTGTATACATGCAGACGATTGTGTATAATCGTGTTATAGATGAGTAAGAAAAACATTGTACTTATATTATAGTTTTTTAATAAATTTTAATAGCGAACGTGAAACGTACATAAACTAGTACAATATACCAATTATCTTTTCCAATGGAAAAACAATTGTTTCATTAGTACTGCAAAAACGTATTTTTTGTTGTGATTTCGATTAGACAATGGTTTCTTTGCAACTGTTTATAGATACAATTCAATCGATTACGTAAATCGTGTCCGTAAGAAATGTCGGGAATTGAATTGATATATCGGGGCGAACTGAAAATAAATCGGGACAGCTCATGAGACTAACATGCCACTGATCAACACAAGCTTCAGTTCGTGTTGTCACTCCCTACCAGCCTGCTAAAGTAGCCGAGGGAATCGGCTGATCCAAGTTCAAAGTAGCGGAGGTTTACTCAAGCTACAAACCTACAAAATAGATTCATCTAACGCATAAATATCACACCTTGACATTTTTATTACATAATAACTACGAAGGAGCACATTGAGCAAGCGGTGTACCGTGGCCCTCCTGGGAGAACAGTCTGATAGAGTGAAAGAGTTACCGACGTTAAATAAGGGACTTCACTTCATTTTACTTTACTTAAGAGGCATGCTGTTCAACGTTAGTGTACCGTCAGCCTCCAGCTGGGAGAACACTGATAGAGTGAAGGAGTTACCGACGTAATAAATAAAGGGCTGTACTTTACTTTACTTTAATTTAATTACCAGGAACCTATGGGCTCCTGTAATTACTAATGTTACTGAAATAATAAATTAACGTTTCTTTCATATATTTATGATACTACACGTTTTGCTGAAGGTAGCAGTTACTGCCATTTTGTAGCAATTGTGTGACTAATTTGCAATTGTGCATGAAATGTGTGAATAAATTATTCAAATGAGCAAGTAGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-