Gene detail

Detailed information of Acti_047150-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_047150-T1	GOLGI-ASSOCIATED PDZ AND COILED-COIL MOTIF-CONTAINING	ScLC4GM_1503	2647732	2677592	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_047150-T1

AACAAAATGGCGGTGGCTGTGTCAATGTTTCGTTGGCTTGATCTTTTAGAAAAAGAATTCGACAAAGCCTTTGTGGACTTGGATCTGCTATTGGGAGAGATAGATCCTGATCAGAGTGAAATAACCTACGATGGGAGGCAGAAAATGACACAGCTTTCGTCTGCATTCGCGCAGCTTGTTCACAAATCTCAAACCATATTTCAGTCAAATGCTAAGTTAGAGGCTGAACTAATTGCCCTTCGGCATGACTTGATAGAGGAGCAGGCTGCACGGAGGGTGCTAGAGAAAGAAGTCAACAACTTATTACTACAGCTACATGCTGTACAGCTACAGCTGCACACAGCATCAGGAACACACACAGAGTCTGAAAGTATTCGAACAAAATTAGAAATGGAAATCTCCAAGTATAAAGTTGATGCAATGAAAGAAGCCAGACTGGAATGCCAAGTAAAACAGTTAGATAAAGATAATGCAGCTCTTAGAAAGCACATATTCTCACTGCAAGGAGAGGTTTATGGAGCACGACTTGCTGCTAAATACCTGGACAAAGAATTGGCAGGAAGAATTCAACAGATACAACTGCTTGGTAGGGATATGAGAGGTAGTGAACATGATAAGTTATGGAGTCAAATAGAAGCAGAAATTCATCTACACAGACACAAAACAGTAATCAGAGCCTGTCGAGGCCGCAAGGACCCACATAATAAACCACCCCAACCTCCCCCACCTGAGCCAGTGGACAGTGAAGATCCTGAGTCAGTCCATCGCAAGAGAAGAGGAATAGGAGAACCAAGGACAGTCATCGTAAATAAGGACAAGACAGAAGGACTAGGGATATCTATAACAGGTGGCAAAGAGCATGGTGTTCCTATCCTAATATCAGAAATTCATGAGGGGATGCCTGCAGCAAGATGTGGGGGGCTATATGTGGGTGATGCTATTCTTGCCGTTAATGGTATTGACCTTCAAGAGGCTAAACATAATGATGCTGTGAAGATTTTATCTGCAATACATGGCGAGATAACAATGGAAGTGCTGTATGTTGCGCCTGATGACTCAAGTGACGAGGAGGATGATACCTGGGAGGATGATGAAGCACGGAGGTACAGCATGCTCGGTAAAGTTGAAGACCCTGCAAGAGAGCTTGCTAATGGTGATGTTTATATGACTAATTCCCCCGGAGACTCATTGAGAAATGGGCTTGGTAATCGCTCATTACAGTTACCATCAACATTACCATATCTACCAAGTCACCCTGGTGCAGCACTGCAAGTAACCAATGCACCTACAACATCCTCATTTCCATCACCAACTACACCCTCCCCTACCTCTCCAAAATATCTTTATTCAGCCCCATCTCCAAAAGATCTTTATTCCGCCCATTCCGCAGACAAAAGTAAATCGTCGCTACAGTCTTCACCTTCAAGTTCCCAGTCATCTCTTGCACCCTCTGTATCTTCACCAATGAATGTTGGCAGTTTGATGCCGTATGTTTATGTTCCTCCTGATAGCTCTGTAGATGGAGTAGCTCTTTTTTCACCAACATAGCATAGGTTTGAGGCTGATGATAAAATGTGATACATATATTTATCTTCAAGTGTTCAACTCAATATCTCAGGAGTGAGTGGAGTGAATGAGCGATATATTGAGTTTAGCACAAGAAAATAAATTATATATCTCTAAGCATCCATGTATATAAACAAGACTAATAAGCACAAAATAATATTACTGACAGAATCAATATTAATGCATATTGTAATGCCATTAAGGCAAGAAGATTAACTGAGAGGCGATATCCACACACATAAAAAAAATGTAGTTTTACATGTGTTCAGATACTAAGAACATTTCTCAGGCTGCAAGGTGGAAATCATTGAAAAACATTACTGTAGATTATAGAATAAATTATCATTACCAGTAGCTGGGACACTCCAGCAAAGATTTGAAGCCATTTTGAAGCCATAAAAAACATATTTTCAGTGTAGTATTGGGTTTTAACAAATTTTGATAAAGAGGCACTGAGCTACATGATAAAGATTAATTGTACTTGAAAAAAGGTTAACTTGAAAAAAGGGCATCATGAATTTTGACTGTAGAGGTATTTTTGAAAAACTTTACTTTACTCTAGAATTTGAGGGGCTGGGGCCAATTTTGTAAAGAATGGGAAGTAAAAGAAGAAAATAATGTGCTAATAGATCATGGGAATTTTAATGTAATAAGATTATCCACTATTCAATAGCACTTGTTGCATGAGGATTTTAAAATGTTTTTGTCAAAATGTTGTTTTAATATTCAGCAAATCAATATTTATTGGCCACTACCATTAAAAAAAACACTGGACTGAGTTGGTAAAGTTAATAAAATCTGATTAAGAAATAAACTCTATCACAAGAAAGAGGGCATTGAAGTTTACCAAGTTTGGGAATGTTTCATTGGATATTTACCATGTGGTGAGCTTCCAAAGTCACAGAAATAAGGGACATTTCGTATTGAATGGAGGGAAGTCAAACATCCCTTATTTTTGCAATTTTTGAAAGCTTGCTATTGAAGGCCCGATTACCCAACAGAAAAAGAGGAATGGTTTGGATAGAGAGAAGTACCAGTCCCATAAATATTTGTCCATTTACACAAGAAATATCTTGAAATGGTTTGGATAAAAGGTGGCACCGGTCCTCAAGTCAAGGTGGAACAGGTGGACAAAGGTGGCTGTTTACATGATAATAATTATTTCCGAGACTGGACATGGTTGAGCCCATGTTTAGATCAGTGTCATTTGTATGCATCGTACATGATGCTCGTAAAACAAAATGGCGATTGAGTGACGATGTAAGGCTGTTGTCTTTTACATTTTCTTTTAAGAAGGAATTCAGTTAGTTCTACTTTGAAGCTGCGTGAAAATAAACATATAAAACTTAGAAAAAAGATGTTTGAAGATAAAATATGCATGTGTCCTTTTCCTTCATTTTCATTTTGCTGCTCTTCCATTAACTCAATTGTTTATCATCTGCCATATTGCGAGAAAGTGGAGCTAAATATGCATGCGGACAGAAGTAAACAACTGAGGACAAAACAGTGCAGACTCAGATTAAAAACAATGGAATGGGTACGAACCCAGTTTTAGCCATTCTATTCCGTTTCGGGACCATAGGTGCCTATATAATGGTCCCAGAATGGGTAAAATTGGCACAGGTAGAAGTAGGGTATGGATCGTGTACACAAATGGAATTATCCAAACCGTTCTACTTTTTATCGGAGCCGTGCCATAATTTTCTGTTGTTTAAACTGGCCTTCAGTTTCAATTTTATACCAAATCAAACTTGGTATTCATTCAGAGGTGGCCTTTCTTATGACAAGGTATACCTATATGTTAATTGATTAACTGAACTTGGCCCCAGTCCTTTTTTACAATTGGATAGTGACGAATATCCACACTCGATCAGTTGTGTCATGTGAGAACATCATATTATTAGACAATGATGTGAATTAAAGAGTAACTTCACTATATTCCTACCATGCATGCTATAACCTCACATTTTTGTCAAGAAAAGAGATGCTACTCTATACAAATTATAGAATAAATTTATGGTAAGTATTGTTTTAATAAAAATGTGTGCCATGTTATCTGTAGGCTGTTTAAAAGTGTTCCCTTAGGAACTTTCACAGCAGAAAAATATGACTGTGTACTGTATTTCCTTGATTAAGTGTCCCCACTTGTATAATCTTTGGAGAAAATATCTTTAAAAATTGCCCTGCTTGAATAATAGCACCCTATTAATCAAGTCAAAGTACAACTTAGTCTAAGGAGGAGGCTGCTGAAATAGAATTAGATACTACAAACTTAAACATCAGCTGGACTCTTGGAGAACACCAAAATTGACAGTGACATATGACACCTGCAACTGTTAATTCTGTTCAGTTTAGTTTTTGAAATAAGTATATATTTATATAGACCTGAAGTTGACTTCTGTTTAGAATTAATTAGGGCCAAAAATTGAAATAATTGCCCTTTTTTGGTTACTAAAAAATGTCCAGGGTGATTATTCAAGGAAAGACAGTATTTTGCCTTGCCAATAAATAAAACTTAAATTCAATTAAATAATCCTATAAATTTGGTATTGATGATTTATATTGTTCCTATATTATAATATGTTATGCTTCAAGCTGTATAAGTGAGTAGCCAAAAGGACTTGTTCTTATCTGATAATGTTGGTTGGTGTTTGGTTTTATAGGCTGCTTTCCCAATTTTGTAATAGTTGATAGAAATAAAAAGTGGTACCATTAATTTTGATTGTTTTTCTCTTTGAAGCAGAGCTCACATCAAAATGAGTGAAAAAAACTTAATTTTTTCAGAGAAACAAATTTATTTGAATGCAGGGCTGAAAACTATTAAAGAAGGCCTGTTTGGTAGATTACAGCCATTTATTTGCCAGGAATCTAAAGAAAATATTGGAAGGTAATTAAATGACAAACCATTATTTTTTGGGAATTGTTTGCAGAGGCTGAGAACTTAAAATGAATTGTTTGCAAGCTAAGGCATCATTTGTTTCAAGTATCATGTCAAAAAAATAAAAAATAAAATTGTACTATTGTGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478	Domain	PDZ domain	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR038879	Family	Golgi-associated PDZ and coiled-coil motif-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16528	GOLGI-ASSOCIATED PDZ AND COILED-COIL MOTIF-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030140	Cellular Component	trans-Golgi network transport vesicle	Interproscan
GO:0043004	Biological Process	obsolete cytoplasmic sequestering of CFTR protein	Interproscan
GO:0044325	Molecular Function	transmembrane transporter binding	Interproscan
GO:2000009	Biological Process	negative regulation of protein localization to cell surface	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-