Gene detail

Detailed information of Acti_046531-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_046531-T1	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	ScLC4GM_1753	57228768	57288180	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_046531-T1

GCCAAAGACATGTGATTCGAGTCCTCGTAAAAAAGAGAGAACACTAAGGTTTCTTGAATTTGCCGTTTGAGATTTGCACTACACGAGAAATTTAGCTGTTGAGATGCCTTCCTATCACATATCTTGGTGATCGACACATAATCTCAAGTGAAACATGGTTTCGGCAGTGCCCAGCCCTCAATGTGTGGGAAGAGAATTTGTGCGGCAATACTACACGCTCCTGAACCAAGAGCCACTCAAATTGCACAGATTTTACACCAAGAATTCCTGGTTTCTTCATGGTCGTGCTGAAAATGGTCCACAAGAGTCCCCAATTATGGGTCAGGAGGCAATATATGACAAGATCAAGGAATTGAATTTCCTTGACTGCCGTACCAAGATCAGACAGGTTGACAGCCACTCAACCCTGGGATCAGGGGTAGTAGTGCAAGTGTCAGGGGAATTATCAAACAATGGCCAACCCATGCGAAAATTCATGCAGACCTTTGTTCTGGCTCCTGGCGAGGACATCAGAAAATACTATGTACACAATGATATCTTCAGGTATCAGGATGAGGTGTTCCCAGAGGAGACCAGTGATGAGACTGCCGATGGCACTGTGGACTCAGAAGCTGAAGAAGATTCCACTCAACAAGGTCCAGTTACTAATGGAGTTGGTAACTATGAACAGCAAGAACAAGGTATGCCGCAGAGTATCACCCAAGATGCTACTGGAACTACACTGTATTACAGTGTCGAACCTGTGCACAGTACCAGTGAGAGTTCTGGGTTGGTGATCCAGAGTCAGTTGATTGAAGAGGAGGACTCCAATGAGTTACAAGAGGTAGTGATTGATAGGCAGGCACCAGAGATTGCCATTCCTGAACCAGCTGAAAGCAAGGCTCCAGAGCCCGAAGAGCCTGTAACACTGACTGATGAGGGCCCTCTTGTGCCAGCCCCTGATGATAACATGTCTGAAGCAGGAGAGCCCCTAGAGGATGTGCCCCAGGATGAGCCAGCCCCAGACTCCCCTCAGCCACAAGAAGAGAAGCCACGCACATGGGCTGCATTGCTGGGACGACCGTCTCCACCCCAGACAAGCACTGTGCCTGGCACTAGAACAGCACCAAAACCTGTGCCACAGCGTGCTGCAGCATCTGTTACACCTCTTCCCCCCAGACCACTGCCTCAGCGTGCCCCTAGAGGAGACCGCAGTACGTTTGGCAGTAAGGAAGCACGCCAAGCAGCCCGCAATGCACCTGATAACCACCAGGTGTTCATTGGCAATCTGCCCAGTGGCGTCAAAGATTCAGACGTCAATGACGTGTTCTCAAAGTATGGTTCTATCCTGGAGATCAGGCTCAACCCCAAGAACTTTGGTTTTGTGATATTTGACAGCGCCGAGCCAGTGGAACAGATCCTACTCAACAAGCCAATCAAGATCGGCACTCATGAAATAAACATCGAGGAGAAGAAGCCCAGTGGTGCCCGCCGCGACGCTCCGGGAGGCGCAGGGAGAGGGGCCGGTGGACGCGTTGGAGGGCGTGGTGGATCATCCAGCCGAGGAGCCGCCGGGGGAACTGGTGCGGGTGGACGTGGAGGTGGTTTTGGCGGGAACGCGCGCGGTGGCCGTCGCAGCAGCGGTGGTGGTCGTGGCGGGAAATTCAACAAATAAAGACAACTTGGAAGTACACTAGGTGAAACGTGCAAGATTCTAAAAAAAAGCTTTTAAAGCTTTTGTGAAACTGTTGACAAAATTGAAACTATACCTGTACTTCAAAATAGACAAAGATTCCAGCGTCCCTTGTACGTGTGGCTTGTCGTTCTACCGTGAGAAGCACGTTTAGATGACACGAATCGACTTCTGGAATGTTTATTTTGTTTATAGGGGTAGAGATTGACTTAGTGTTGTAGATAGTTTTAAACTCAGATGCTTTTGTTATTTTCTCTTATTCCACGAAAATATGTTTCTCTTAGACCTACGGCAAATGAAGCAGCTTCTTCTAAGCCTTCTAACGTAATGGTTACGTTTTGATTATTTTGTCGAGCTTTCCGGAGCTCTGAGCGTTTCGCTATGGTCATTTTGATACCAAATAATGAGGCGGCCGGCCATAGCTGAGAACTGTATGAAAGTGTACCTAAAGTTTTTTAAGAGTAGAAAGTGAAATTCCCCGCGATATTTATATCAGAGTTTACCAGTTACCGACGATCCCAGATGACTCAATAAAGAATTTACAAAGCAGGCTAGCAAACGACTTCATGTTGTGTTCTTACCGGGGCAACGGGGGTTAAGGTACATTGGATACTCTTGTAGTGTTACAGCTGAATACATACCTCTTATTAACGGAGTGCGAGATCGGTGTCGTAATTCGTAAAGCCTGTGCGAGATCCGTATCGTAATTCGTAAAGCCTGGTTTCCATTTGAACGCTACGATCGTCGCGATCGCCGAAAAACACGTTGGCCGATCGTAACGCTGGTTGGTTTCCATTTGATCGGTACGACCGTTGCGATCGCCCAGCCAGTTCAAAAGAGCCTGGATCCGACAACAAAGTTTGGCGCCGAACATGAATAAAAATGGCGGCAGAGAACGGGAGACCCGTGCTTGAGTCGTGTTATTTCATTGTTCTTGCCCTAATTCGATGAAGGAGACAAAACAATCAAAGGCGAAAACATCTTCAACTTGTCTCTTTTAGTCTCTACTGAATTTGTTGTAAAGACAGTTGTATTTTTGAACTTCCTCCATAAACAAAATGCTCTGTGAAGTAGACGTCATGTTGTTGAAGTGACAACTATACGTATCAGTCGACAAATCAGCATTATGGGATTTGTTCTGATCACTTGCAACGTATTGTGGGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF02136	NTF2	Nuclear transport factor 2 (NTF2) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002075	Domain	Nuclear transport factor 2 domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR018222	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR032710	Homologous_superfamily	NTF2-like domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039539	Family	Ras GTPase-activating protein-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10693	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-