Gene detail

Detailed information of Acti_046168-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_046168-T1	TUMOR NECROSIS FACTOR RECEPTOR	ScLC4GM_1753	47159206	47168573	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_046168-T1

ACGTTGTAGTATTTTCTGTCGACGGTGACTCATCGACATACACTCCTAGTCCTACACAACACATACGCGCGTACCACTGTTAACGAAGGAGTTCTTTCGACGGATTTTACTTTTGCGAGATCCGTGTGATGCTGAAATTCTGTAAAAATGTTTCACCGTGTGCTTCGGGGAAAGTTTTAGCAGTAAGCTATCACCGAGCTTCGCTCAAGTCAAGATCTCGGCTGACTAGAGTTGCCACAAGTCGAGAAAGTCTATCCGCTACTATACTACTAGTTTATTATATCTCGATATAAAAATTATAATCATAGTGAAGAGATTTTTCATCTGAGAATGGTTGAAAGGAATTGTCCCCACTTGTCAGTATGGAATATTATCAAGATTGTTTTCTTGGGATCCATAGGCATAGCTACAAAGGTTATGTCATCTGATGTTAAATGTACAGAAAACCAGTACACAATGAAAGGTGTTAATGGGTCAACAAGATGTGTGGATTGCCCACCATGTCCAGAGTCACTGGGTCTGTCTGTGGTTTGTGGTGCAGTAATCAACTCCAACACCATTATTGAGTGTGTATCTTGCATAGAGGGCTTTAATTTCTCAACCAGCAATAACCGTGAACAGTGTGAGCCCTGTAGCTCATGTTATGATCAAGTGGTAACTAAGAAGTGCACAGTTACTAAGGACATTGAATGTGGCAAGAAATGTAAGAGCGGAGGGAATTATTATGACTCAAGTCCTGAACTCGAAGACTGTCAACCCTGCACATGGTGTTGTGGTGATGAAAAAGATATTGTGGAACAAGAGTGTTTGGATAAAGGAATGTCAAAAGAAAGAAGTTGTAATATGCTTGGAAAGAAACGTTGTTCCCCTGTTGGAACTGTCAAATCAAAGATACACATTCCTACACATTCCAGTGCAGTTAACACACTACATTTTAGTGTTAAAACTGTCATAAAGCCAACATTTTCTTCAACACACATCCTAGATGTTACAAAGCAGAGCCCCAGTGATCTACAGCATAAGACAACTAACCAACCTACTGCACTATTTGTTACAGCTTCTTGCATATCAGGTTTGGTTATTTCGATGATAATTGCTTATATTTGGCTGAGAAAGAGAAGAACAGATTGTTCCATTTCAAGAAGGCGGCAGCCACTATTTTTTAACACTTTAAGAAATGCTGAGGAAGTGCAAGAATGGTTGCCTATGCATCAAATGGACAATGATCATTATGGAAGAACAGAAGTAGGATTGGCAACAGCAGTGGCAAATCCTCATTCTCATCTCAGTGACAGAAGGCAGAATGATGTCAAAAGAAGGAACAAAGAAGAGGCAGAGAGACTTCTTCATCTACATGTAGCAAAAGAGTCAGCAACATGTGCCAATCCCTCATCCCCATCCATTGATGTAAGGCAAGGTACCAGTAGCCAAGAAGGAAGCAGTGGAGCAGAGTCTGAAAGACCGCTGATCGCCATTATGGCTACAGCTCGGGAAAGGACAAATGATTGTGAAGGAGACAGTATCAGGGGAGGATCAGAAAGGGTTGGTCTTCAAAATCCAAACCAAGGACCAAGGATAACGTTATCTATCTTATTGAGGACAGAAAACTGGAAGTCATGTGAAGAAATCTGTGATCTACTGGAAGTGGATTACTCGTATCAAAAGCTAGCTGCACACTATAAAATGGAAAATGTAAAGATAAAACTACTCAGGCAGAATAGACAAAAGCAATCCGAGGAGTCACCCACAAGAAACGTTTTTGAGTTTATAAATTGCAGTTGTGATTCAGGGCTGACGTTGATGGATTTAGCCAATGTAGTGGAAAAGAGTGTTGAAAGAAAAGATGTTGCATGTTTACTGAGAAAATTTGCCCAATTAACAGTCAAGCAAAACCAGTGAATGGAAAATAATGTTCATTTATTATATACATTGTAGCTAGTAAGTAATTTCGCAAGCTACATGTATGATTGGTTAATTTGCGGTCCATAACATACTTCCCGTATGGACCTTCTTCCCACTTCCGGTCTAAAAAAAACTGAAGCTACACAAACATCTTATTAACTCGTTTGCTTGATCCGTACCGTAAGTTTTGGATCCTGATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR052302	Family	Neurotrophin receptor-related death domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46605	TUMOR NECROSIS FACTOR RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005035	Molecular Function	death receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007266	Biological Process	Rho protein signal transduction	Interproscan
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0015026	Molecular Function	coreceptor activity	Interproscan
GO:0048406	Molecular Function	nerve growth factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-