Gene detail

Detailed information of Acti_045096-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_045096-T1	ATP-BINDING TRANSPORT PROTEIN-RELATED	ScLC4GM_1753	39207544	39231290	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_045096-T1

GATTTTTTTGTGTATTTCTCTCCTTCGGACAATGGCCTTCAAACAGGATCAACAAACACAGGACAAACTCACCCGTATTGCTATCGTCAGTACTGACAAGTGTAAGCCTAAAAGATGCCGGCAAGAGTGCAAGAAATCATGCCCTGTAGTTAGAATGGGGAAACTTTGTATTGAGGTAACACCAGAAACTAAAGTGGCGTACATCTCAGAGCCGCTTTGTATTGGCTGTGGAATTTGCTCAAAGAAATGTCCCTTTGAGGCCATCACTATCATCAATCTACCTAGTAATCTAGAGAAGGACACTACTCATCGATATAGCGCCAACTCGTTCAAGCTGCACAGGTTACCAATCCCTCGTCCTGGAGAGGTCTTGGGTCTTGTAGGGACTAATGGTATCGGGAAGTCAACAGCCCTAAAGATCCTGGCTGGAAAACAGAAACCAAATCTTGGGAGGTACAATAATCCTCCTGACTGGCAGGAAATTCTACAGCACTTCCGAGGGTCTGAACTGCAAAACTACTTCACCAAAATTCTTGAAGATGACTTAAAAGCAATCATCAAGCCCCAGTATGTAGATCAGATTCCAAAGGCAGTCAAGGGCAGTGTGCAGTCAATTCTTGACAGGAAAGATGAGACTGGCACACAAGAAAGAATCTGTGAACTGTTGGATCTTACTGCTGTTCGTGATCGTAATGTTGATGAACTGTCTGGTGGAGAATTGCAGCGATTTGCCTGTGCAGTTGTGTGTATTCAGCAAGCTGATGTGTACATGTTTGATGAACCATCCAGTTACCTTGATGTCAAGCAACGTCTTAAAGCTGCCACAACCATTCGTGCTTTGATGAGTGCAGTGAGTTACATCATTGTAGTGGAACATGACTTGAGTGTGCTGGACTACTTGTCAGACTACATCTGTTGTTTGTATGGCATCCCTGGAGCCTATGGAGTTGTCACTATGCCTTTCAGTGTCAGGGAAGGAATTAACATCTTTCTGGATGGCTTTGTACCAACTGAGAATCTAAGATTCAGGGAAGTTTCGTTGGTTTTCAAGGTTTCAGAGACAGCAGATAAGGAAGAGGAGATAAAGCGACTACGCAGATACTCCTATCCAACAATGAACAAACGCTTGAAGGGTTTCGAGATGAACATTCATGCTGGTGAATTCACAGATTCTGAAATTATTGTGATGTTGGGAGAAAATGGTACTGGTAAAACCACATTCATCAGGATGCTTGCTGGCAAACTGAGTCCTGATAATAATGTGGAAGTTCCAATGCTGAATGTAAGCTACAAACCACAGAAGATCAGCCCCAAGTCACAGGGTACTGTGCGTCAGCTGCTACATAACAAGATCAGGGATGCCTACATACATCCACAGTTCATTGCTGATGTCATCAAGCCACTGCAGATTGAAAGCGTTATGGACCAAGAGGTGCTGAACTTGTCTGGTGGTGAGCTGCAGCGTGTGGCGCTCACAATCTGTCTAGGAAAGCCAGCAGATGTGTACCTTATCGACGAGCCATCGGCTTATTTGGACTCTGAACAGCGTCTCGTGGCAGCTAAAGTCATTAAACGGTTTATTCTGCACGCCAAGAAGACAGGATTCGTGGTAGAGCACGATTTCATCATGGCCACGTACCTAGCTGACCGTGTCATTGTGTTCGAGGGAATACCGTCCATCAAGACCCTGGCCAACACCCCCCAGACTCTGTTAACAGGAATGAACAAGTTCCTCAACTCTCTAGAGATCACCTTCAGACGAGATCCCACCAACTTCAGACCACGGATTAACAAGCTCAATTCCGTCAAGGATGTTGAACAAAAAAGGAGCGGGAATTTTTTCTTCCTTGAAGACTGAGGCTTGCTAAAGGCAGCGCTCAGGAGAATAAACACCCCAGATGTCCGTCCCGGCCACACCTACAAACAACATGGCCAGGAACGACGAGGATCCCACCAATTACCAGGCCAGGGACTCACGAAACGGTCCGGCATTGTAGGGGTGTTTTGGGCGCAGCAAATCGTAAACTCACGTCTCCATGTGACTTGATGTAGCAGGTTTAATTTATATGTTATATATCGAAAACGAGAGCTAGTGTGTGTTCCTTTGTAAGCTTATTTGGAACAAGGAGCCATTACCCGGAGTGTCATCCATATATTCGTGATGCAGCAATTTCGCAGAGCAGGTTATTTTAGATTTCATTTCTCATTGTTCGCTTTCATTGCGGCATGTTGGAACATCTTTAATAATTTGAATTAAAATTATCTAAACGTTTTTGATTGGCTAGCGGAAACCGAACTCACGGGAATCGCATTCTAAAAATTAGTATGTGAGATGGACGCTCCAAGCAGTACCGTCTGGCTCCAAAATAATCCCGATGAAACATACACAAGTTTTCATTTTATTTGATAGAAGAATGTAACCTGGTTGTACCTTTCATTCGTCGTTCTCTGTTCGTTGCTTTGGGAGATGCGCGTTTACGATTTGCTGCACAGCAAGCTACTGTCCATTATTTCCAGAGGAGTTATCGGTGTTCAAACACTCTTGCCGTGTTTTGATGGAACTCTAGAAGAGAACAGTACGAGTCCGAATAACCGCCATCCTAAATGAGTAAGGATACCACTCGAGATCCAACATCACTGATGGTTACAAATCGTCCTTTGCATGATACAATCACCTGGTTGTACTGGATGGCAAAAGATATCCGACTCATTTATTTAACGTCACTTGTACGAGATCGGTAGTGTTATCAGCAAAACCTGTTTTTTTCACTTCCAATCGATCTTTCTAAAACTGCGTTTTTAGATAGTTTGCCCTCCAGTAAAGCGTTTCCCATAGGATCACGAGCTCAAAAGGCATTATGCATGATGACGTCACGCTTTTGTCATCACCACCAAGCCTCAATTTCGTGTTGAGGAAATGTGCCAAAGTGAGGCTTGGTGGTGATCACGTGATACCACAGCACTTGCAAATGTCATTCGATCCCAGGTCTCAATCACGCTCGGCCAATATGGCAGCCGCTTCGATGATAATAATAATAATAACCACATTTATATAGCGCCATATCAACCACAGTTTCATGGCGCTTTACATATGACTGACATATCCCGTCAGTGAATTATTCCGTTTTCTGCGCGAAAAAAACCCCCTCTACCGCCTTCAAACAGGCTATACCAGCACGTGACTGTTTCGTGCAAAAGGCCTATTATCTAAAGATGCCAATTTGGTATAATAATCTGTTAACATTTTCTCAATAATTAACGACACGTAATATAAACCTGGACGGTATGCTTCTGTTTACCCTAACAATGACCGACCGTTTCCTCTTTCGTGAGTCCTCTAATTCCCGATAGTAGATTCCTCATTCAAGCCGATTACAAGAAGAGACCTCACTGTAGTGTGAACGTGGTAATATGGCGAGAGTAAACCAATCGGAGCAAATTGAACGATGTGAAAGATACAACAAGATATTCGTATTCCATATAAGAAAATTAGTGGTGTGTGATGAAGGTGGAAGCATTCTATATCTACAGAAGTCGCATACTCCTAGTACCTATTGAAATAAAATTTTCATCATACAATTTTAGATTTTTTCCCTAATTGCTTTTGCTTGGGATTTTAGTGTTTTTATGTATTTTTGTTCCTCCAGAACATCCATTTGCGTTAATCAACACTATGTAGTATTTTGAACCTCTCCATACCAAATATTACTAAAACTTCAGAGAAGCAATTATGGAAAATAAAGAATTACACGTGCATCATATATATAGCTGTGTTGTATATATATATATCGAATCCCAAAACACTACTTCTCGTCATTCCCATAAAAACGCATGTTTGTTAATGAAAACACCCCATGACATTGTATTTTAAAAACTAATAATGGTTTTAGGCCCCTGATACACACCATGAATTTTAACCAGTTTGATGGAATTTTCATTGGATGTTTCATTTTCATGAGATTTTCATGGGAATGACGAAAGGTTAATCGTTACTATTAAAGACAGTCACATGAAGCTGTGTTGTATTTGTTGTGAGAAAAACTTTGGTTGTTACGCTCAGGTTAAACGAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00037	Fer4	4Fe-4S binding domain	Domain	Interproscan
PF04068	RLI	Possible Fer4-like domain in RNase L inhibitor, RLI	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR007209	Domain	RNase L inhibitor RLI-like, possible metal-binding domain	Interproscan
IPR013283	Family	RLI1	Interproscan
IPR017896	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR017900	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR034348	Domain	RLI, domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19248	ATP-BINDING TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000054	Biological Process	ribosomal subunit export from nucleus	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0006415	Biological Process	translational termination	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043024	Molecular Function	ribosomal small subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-