Gene detail

Detailed information of Acti_044164-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_044164-T1	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	ScLC4GM_1753	23805051	23814038	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_044164-T1

GTTGAATCGAGGAAAGCTGATTGCTTGGAATTCGTCGTCTCATCCATAACCAGAATGATTGGGATCGTTCCCAATCACTCTTGCCGCTTCCTGAGCCTGTGTGCATAAACATGAATCTGTTCCAGAAGCCAAACCAGTGGATTTGCGCGATCGCGGCCATCGTTGTTCTGTGTTCTCTCTGTGTCGTGCTCAGTTGTTCAGGGTTCATCAGAATAGAGTTCCAGCTGAGCGCGCATAAAGACAAAATCGCTGAGCTTGAAAGAGAGCTACAGATGCTGCAGAAGATGCACGAACGAGTTGCAGTCCGAATCGACGAGATTGAGTCAAAGCATAACCGGAATGACCGAGACGTTGAGCCAACACCAACAATAGGAAGCATCTGTCAACAGTGCGTCAAACCTTGGGTCAGAGAGGAGATCGTCAGCTCCGTCTCGTACGCCGTGGAGGAATTTTGCCGGCCCAAGACAAAGCTATGCTTAAGAGGACCCCCTGGAAGCGCTGGGCCGAAAGGGGATAAGGGAGATAAGGGGGATCAGGGTGATCCAGGAGTTACAGTTAACGGAGGAATTAAGAGCGATGTTGGTGGCCTAGATTTGGACATGGTGAACGATCCTAAAGAGGAGGGGATAGGCTCTATAAACGCGCCTGGCATAAGGGTAGTACCCGCATTACTGGCCGTTAACGAGAATGCGCCTGCTATCTTCTCGTGCTCTAGTACAGTGACTGGAAAGTCTACGATCACGTGGAGCAGGATCCATGGGAATCTGCCGGGCAGAAAAGCTGTTAAAGTGAAGGCAGGGAAGCTGAAGATCAACCGAGCACGAAGACAGGATCGTGGAAAATATATGTGTACTGTGGATAGTCCTAGGGGACTGGCCCGGGCTATCGTCACCCTGCATGTTAGAGGTGCACCGCGCATTTTTCTGGACAGCGGACCAGTATATGCAGAGAAAGGAGACAACGTCAGTTTACCACGTTGCCTAGCAACGGGCTATCCAACGCCTGTAGTCTCCTGGCAAAAAGTCCTGGACACTATGCCAGAGGGTCGAACGGTTACCTCGGACCAAACTATGACCATCCTCAAAGCCAAGCGGTCCGATTCTGGCCTTTATCTCTGCACAGCTAACAACCCACTGGGTTCAGCTAAAGCCACGACTCACTTAGTGGTTGTCGTAAGGCCGAGATTTACCGTTAGACCACAGAGAAAAATGAAGCGTTTAGCTGGTGCCTCATTGGTGGTAAACTGCAGCGCAACCGCTGACCCGATGCCGACAATAACGTGGGAGCATTGTAGAGTAGGGTTAGCCCGGAAGCGTTATGTTACTTCCGGTGGAAAACTCACGATGGGGCATCTAAGGGTTGATGATTCTGGCGTGTACACATGCGTAGCTACTAGTAAACCGCTGGTCGCAAGAGTTTCGTTCGAGATCAAAGTCAAAATAGCTCGAGACTGCTCTGTACTGTACTCAGCCGGTGTCCGTTCCAGTGGTGTCTACTGGATAAACCCGGACAGTCGTACGGCCTTCAGCGTCTTCTGCGACATGGATACTGACGGCGGCGGATGGACTGTCTTCCAGAAAAGATTCGACGGCTCGGTTAACTTCTTTCGCCGTTGGAAAGAATATAAATCTGGTTTCGGCGACCAAAACAAGGAATTTTGGCTTGGAAATAATAAAGTCTACAGATTTACGAATGCAATTCCGAGCGAGCTCCGTGTGGAGGTTGAAGACTGGACCGGGAAAATGGCTTTCGCCAAATATGGAAATTTTCAATTATCGGACGAGAGGTCGCAGTACAGGTTGACCGTGGGCTCATATGCTGGCAGCGCGGGAGATTCGTTGTTGTACAGTAACGGGATGAAGTTTACAACCAGTGATAGAGATCATGACTTGAGTAAGGAAAACTGTGCTGTTGCGAGTGTTGGAGCTTGGTGGTATAAAAGTTGCCATGACTCCAATCTCAACGGCTTGTACATCAAAAGTGTGCGGGATAAAACCGGCATGAATTGGTACTATTGGAAAAATAACTTGTCGACAGTAAAAGCTTCGCAAATGAAGCTGAGACCTAAAGGTTCCAAATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00147	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014716	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR020837	Conserved_site	Fibrinogen, conserved site	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR050373	Family	Fibrinogen C-terminal domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19143	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-