Gene detail

Detailed information of Acti_043812-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_043812-T1	TRANSCRIPTION FACTOR CP2	ScLC4GM_1753	14783955	14825618	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_043812-T1

GTCGAAGTTTTCAAACCATCGCAGTGTCTTACTCTTAGCTCGAAAATTTGTTCCTTCCCGTGCTGGGAAGTTTCCCCAAAAACATGTATTTAAGAGTATCCTAGCATTAGCTGTTATGTCTGCAACTGAAACAAAGAAGGATATTGTGCCCGGGAGTATGGCGACAAAGGTTAGTACTGAAAGCACGACTGTCATATTATCGGCAGGATCGAATTCAAAGGGAGTACAAAGCTCTCCCAGTCCAAGCGGTCAAGCTTCGGAGAGAGAGGAACGCGCGTGGAAGGCTTACTTTGCCCAAACTGATGCTCCTCTTACGGCTACATTGCTCGCTCAAGTCAATGGGGAAGATAGCAACATGGCATCCACCCTTGGGTTTTTATACGACTACTATGGAGTAGCCGAAGACTCGAATCAGGCTCCATCTTCACCTGGTTCATCTGGACCATCCTCAGCTGCTAACCAGTCTGGTAACAACCAAGATAGTGACTCAGAACCAAACAGCCCAACTCACTCTGAGTCATCCCTTAGCTTTCTTCACTCCATACAACAGATCAAGCAGCAGGCTATCTCAGCAAAATCTTGTTCAAGCCCCAACCTATCAGATGGCAGTCCAAATTCTGGTGGCAAGACAGATAGCAGTAATACAAGGGATAAAGCTGGCCAGGGTATTTCCGTCGTACAGCAGGTCAAGGCTCAACCTGGTAGTTCTCCAAGCTGTAGTAGGCCGGGGATTTCCACTGCGCGACCTCTCTCTTTTCCACCTGGTTCATCCAACAAAGGTAGCCCAGGAGGTCAAGTTACTGATGCCACCTCAATAGCTCTTAGTCAGACTCCTCCTGAGGCATATAACTTTGGTCCCTATAGTGCTGCCCTTAAAGCCACGCCAACAGTTTTCTCTGCACAAGACAGTTACACATTCATCCTTGAAGCGCCTACATCTATTGTACAAAGGAGAGGAGATGACACTCTGACATACCTTAACAAAAGCCAGTTCTATGCCATTGACTTTGAAGGAAACCTTGATCCACCCACTTCAGACGATGACCTCACAAGAGTCAAGTCTATGGTACACCTTGTATTCCGTGATGAGAAGGACCCCAGAGCAGAACTTGAACACTGGCATTACTGGCACAGTCAACAGCCTAATCCACAACAGAGAGCATTTGATATTGATAGGAAGTCCTGCCAGAATATAGACGAGAACATCAGTGATCTATCATACAACGGTGCTGGCTTCACATGGAGTCCTCATCTGAATGCTAAGATTGTGATCAGGATAAACTGTCTCAGCACTGACTTCTCACCTCAGAAAGGAGTCAAGGGAATCCCCCTTCATCTTCAAATCGACACTTATGAAGACTTGGTCAACCCAGATGCTGAACCTGTACACAGATCTTTCTGTCAAATCAAAGTCTTTCGTGATAAGGGTGCAGAAAGAAAAAACAAGGATGAATCAAAGTCAGCAGAGAGAAGAATGCAGAAATGGATGAAACAGAATCCAATTGGTGCGGATCCCACTATGATTTCACCAACTAATCTCTTCCACCCACCCAGTAAATATACTCAACTCCTGTCCACCACCCCCTTGGGACCCAAGCCTGTTCTGTTTACTCCAGTTATTAGGAGTCCATCTGGTAATATTCTTGCTACTGAAGACTCCAGTTTACAAACATCAGCACTCATGGCAACAATCAGAGAGCGTGAGCATAAGAGAACCATACAGGCTGCCCTCGCCGTAGCTAAGGAGGAGTTTGCTGATCTGGAGGTTGTGCCACGAAGCAAGGTCCAGCGAGTCTACAAGCCTAACAGACCTGCTGTTACCATCTATGTCAAGAAAGAAGAAGAAAAAGTTTATAATGCCCTCATGTTGGACAACCTTTGTGTCAAAGAACTTGTGCAGCAGATTGCCAGCAAGTATGGGATGCCAGCTGATATGATAAAGAACGTATACAAGAAGACAAAGAAGGGGATCCTTGTAAACATGGATGATCGCATGATAGAGCAGTTCGTGGACGAGGACGATTTTCTTATCAACTTGGATTTCGACAACCAGCTTGGCCACTTTGAACTCACGCTGAAGTACTGAGTGGTGAAAAGCCGAACACAGAGCAATTATTCACCGAAGTGGAGGTGAATAGTGGTGTGTATTTACCAAGACGCTTCGGCGAGGTAAATATCCACCACTATTGACCGACACTGAGGTGAATATTTTTTTAGTATATATACCACACACGTGAAAGCCAGCACCAAATATTTTATTTTCTGTCAAATGGACAAAAACTCGTGCGTGGTGATGGCTGCTTCGCTCGGAGATAATTAGCAAAGGATATTCACCACCGGAGTAGCCAATCAGAGCGTGCAAAAAGCACTGTTCACTTGTGTGGTATATACCGTGGGATATCCACCTCTGAGAGTGTCTAGTACTTTGTGTGATGAGTATTAGGTAGAACTTCCCAAAGGAAGTCTCAACTTTAAGTATTATTTATAGGGGCTGTGTCACTGAGAGGTCTTTATATTAGCAGTCCGAGCCGACACAGTTACTTTAAGCGGTTTTCATATGAATTGACGAACCTTGCGCACATGTGGGATGGTAAAAATCAAGGCACACATCCAAAAACACAACAAGATATGTCGGTATAGACAGTCTTGGAGGAAAATATTGCATATCCTTTGAATCAAGGATTAAGGGAGGGGACTCTAAGTGTTTGCAGCTAATAGTTCAATTCTTAGTTCTTGGCCGCCATTTTGAAAGGTAACCAAGCCTTTGGTGACATCGAGACTGGAGTTGAGACATGGCTTGTATCTAGTTAACATGATAATCAAAATCTATCCATATTCATAGAAAGAGGGTTTGTATCAGTGCAGGCTCAACTCCAGCCTCCATGCGAGGCTAAGGCTTGGTTACCTTTCAAGAACTGGACCATTGACAGCACCAGTCGTACATTTACATCGACTCAAACTCGCGTAACAATACGACATAGCCTCTTCGACAGGGCTAGAGTCGCCCTCGCAGTTCAGCCCCTTTTCCTAGCAGTCACTGGTTCATATTTTAAGGGTTTAAGTGTTGTGGTCTTCAGTATTAATGTTGAGTACGTCTGAAGATTTAGCAATGATGAGAGTAGAATATTCACCCACGTGTTTTTTTCTATTGTTTTTCTTTGCTTTTTCTCTCGTTTATTGTCCTCTTTATGGTTTGTATACGGTGCGAACTAAAGCTTAAAAAATGTTAATTACTTGTGAACAGGTAAACTTAAAACTATTGAAAGCGAGGGAAACCAGGCAACAAGTCATTTTTCTTTGAGAAGGGTGACTCTCATCTGTCCCATTATTCTTCATCTAAACAAACTAACCAGTCGAAAGTTTATCTGGGGGAAAGCATGCTCGGCTTTGGCAATGCAAGGCCCCTGTCAAGCGGGTTCGACATCAGTTCCACAACCACCGTACCGAGAAAGATGGAGCGGCTTGTACATGAACTGACGTTGAAGAGAAACCGTTTGACAGGGGCCTAAGAAAGATACCTTACGAACAAGCACAGAAACTAGTTATTCTTACCATAGTTAATACAGTGGAATGGTTATGAAACCCGGCAAACTTCAAAGGGGCTAACAAAGGCTCTGCGATTTATGTTGGAAGGGGGCAAGACAAAAGATTGTGCAGGGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04516	CP2	CP2 transcription factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007604	Domain	CP2 transcription factor	Interproscan
IPR040167	Family	Transcription factor CP2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11037	TRANSCRIPTION FACTOR CP2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-