Gene detail

Detailed information of Acti_041674-T2 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_041674-T2	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED	ScLC4GM_1681	38911410	39007201	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_041674-T2

GGCGGACGAAGCGCGTAAACGTGCAGCAGAGGATGAGAACGAAGAAGATGAAGGTGACGAGGTTATAGGACCTATGCCGGCACTCGAACCGAAACCAAAGAAGAAGAAAGTCTTAGAGTTTGAACAAGTTTACCTTGAGAATCTACCATCTGCTGAGGGGTACGAGAGGAGTTACATGCACAGGGATGTCATTACACATATAGCGGTTACAATCACAGACTTCCTAATTACAGCAAGTTGTGATGGCCACATCAAGTTCTGGAAAAAGGAGGAAGAAGGGATTGAATTTGTCAAACATTTTAAAAGCCATTTAGGTGTTATCCAGTGTATTGCTGCCAGTGCTAATGGACAGCTCCTGTGTTCTGTAGCTGATGATAAGTCTATGAAAGTCTTTGATGTGGTGAACTTTGACATGATCAACATGCTAAAGTTGGATTACCAGCCAGGCCAGTGTGAGTGGGTCTTCCCCAGGGGGGCTGCAACTGCAGCTGTGGCTTGCTCAGATAAAGAAACAGGAGAAATACACATATATGATGGCAGAGGAACCAACAATCCCTTGCATTCGCTCCAGGTCCACACTAGTGCTGTATCTGTTATTTGCTATAATCCTACATATGACATTGCAGTATCGGCAGACAAGGCTGGTTTGGTGGAGTACTGGTCAGGACTGAAAAAGGACTTCCAGTTCCCCAAGAATCTTGATTTCAACTTTAAGACAGATACAGATCTCTTTGAGTTCATTATGTGTAAAACCTATCCTGTATCAGTAGCTTTCTCTCCAAATGGAAAGTTGTTTGTTACTATGGCAACAGACAGGAAGGTGAGAGTATTTCGATTCCTATCTGGCAAGAAAACGAGAGTGTTTGATGAGGCTTTAAAAGTGTTCACTGAAATGCATCAGCAAAAACAGCAGCTCCCTAATATGGAGTTTGGAAGACGTGTGGCAATAGAGAGAGATGTAGAGAAGTCAGATGCATTCAAGTACTCAAATGTTGTATTCGACGAGAGTGGTTATTTTATTATGTATGCAACCATGTTAGGAATCAAAGTTGTAAATCTTCATACCAATAGATGTGTCAGGATGATAGGAAAAATGGAGAACGTACGCGTCTTGCAGTTGGCGTTATATCAGGGCAGACCCAAAAGTAACGCCGCTCTAACACTGGAATTGCAAGCAGCTGAGAACCCGTCCTTCTCTAAGGTCTCCAGAGACCCCACAGTATTCTCTACAGGTTTTAAAAAGAACAGATTCTACGTCTTTTCGTCCAGAGGGCCTGAACTTAGTGGCGAAAGTGATCGTGATATCTTTAATGAGAAACCATCAAGAGAAGAGATTTTAGCAGCTACACAGGGATCCGGGGCACCTGTCAAGCTGCCAGAGGTCGCTACTTTACACACAACAATGGGAGATATCACAGTCAAGCTGTTCCCAATAGAATGCCCCAAGACGGTAGAGAACTTTTTTACCCATAGTAAGAGTGGTTACTACAATAACAACATCTTCCACCGGGTGATCAAACAGTTTATGGTACAAACAGGAGATCCACAAGGCGATGGTACTGGAGGAGAGTCCATCTGGGGAGGTGAATTTGAGGATGAGTTTCACCGGAATTTACGTCACGATAGACCGTACACTCTAAGCATGGCTAACGCTGGACCCAACACCAATGGATCACAGTTCTTTATTACTGCACTACCCACGCCGTGGCTGGATAACAAACACACGGTGTTCGGTAGGGTTATTAAGGGAATGGACGTAGTACAGCAGCTGAGCCAAGTGAAGACAAATCCGAAGAACGACAAACCTTATGAAGATGTCAAACTCATTAACGTCTCGACGAAGGGCTAGTGAAATACCCACCACAATCATGAAGAAATAAAAGACCTTTGAACGACAAACCTTATGAAGATGTCAAACTCATTAACTTCTCGATAAAGGACTAGAGAAATAACCCACGACGATCTTGAAGAAATAAAGACTCGGTTTGAACTAAACTACCATAATTTAAACGAGAGCTTCCATACGACATTGTAGAAGTCAAGTGGTGCATTTGGAATAGAATCTGAGGGTTATATACGTGAGATGTCGTGACAGTATTATCCTTTAACGCTTGAGATAGTCAACTATATCGTTGGACGTGCCTGAGCAGTCGAGTAGAGTACTGGGCCGAGTACACAACAAATGGCGCGAAAGTTTCAACATTTTATCGAGACTGAGCTCGAGCCATCGCGTTATTTCATTACTCGTTCGTATTATTTTGCCTAAGGTATGCCCAGAAACGCTGTATCTAAAATAGTGGTGACTTATGGAGCATCGGTGAACAAATATGGAACTAAAGACGTTTTCAAGTCACGATTGATTGGTCTAAAATGTTAGCTTCATGATAGAACTTGACAGATCAAGGAGCCAGTTACATGAACTGGCCTTTCTGATTGGACATAGCTGACCAATTGGAAGCATCCTTATATATCATGCGAGCTTAACCTTGTTAACTGTCAAGTTTTTCGATCTCTCGACGTAAGGGAAGTTCCTTCCAGTGAATGCGTGAACATGTTATCAACATGCAAAACTTAGAGCTAGAAGCTGAACGTGAAATGAACACTCGACTAGCGACGAGAAAAGGAGATTATCGATAGACTGTCATCAAGTCATGGGAAATTCGTACGAGGTTGGGAAGAGCTCCCTGTCGATCTTGTCTCGACCTTTTATCCGAAAACGTTTTTTGATAGCTGTTGCACTGCAGTAATGCAGAGACAGTCGGGAATAGAAAACAGGAACGATTGAAGTTTCAATGGCAACCAACATCTTATAGTCGAGTTGTAGTCCATTTTTCGAGGATTTTAATTAAAAACGACCATTAGTCAAAGTAATCCAGTGTTATATTTGAGAGTTACATGTATATCATGTCTATTTTGGAGTTAGCCTAAAACCTTTTGGAAGATTTTCATTGTAATCCATATTTAATATAATAATTACTAGCAGGCTACTTGGAAATTAACCATAAGAACGCTCAGGCCAAACCCGCCATTTAATAAATAGACAAAAGGGGGGTAAAGAGGCAAATTAACATTTTTCCGAAACAAAATCTCCCTCCTAACATCCCGTACAAGTCGGTCAAACGTTTCGAGACCCTCTCCCTCTACCTCGTACTCCTAGGGGAAAACGTGTTCACGTTAGCGAATGTGGCCTCCATAGCTGATATTACAGTGGCGTCTACGAATAGCAGTTTCAGCGGTACTGACCTGAACTGAAGTAGTCGCGCTTGTTTAAGAGGGTGTTGGTGTCATGCAAGGATTACATCGAAGTGAGGCGTTCGGGTCAATACCGCTGAAACTACTATTCGTAGACGCCACTGTAATATCAGATATTACAGAACATTATTTCTGCGCATGTAAAATTCATATCAGATCATTGTTTTGACCAACGACCAGTCGTAATACTTAATTTGGATTAAGAGATTTTCAATACAGTATGGACTCTGATCTGTATCACAAATGTAGTGTATTCACTTTAATTTAATTAACGAATAAAATATGATTCTCCTCTCTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00160	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR002130	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020892	Conserved_site	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Interproscan
IPR029000	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR044666	Family	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45625	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000413	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-