Gene detail

Detailed information of Acti_041654-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_041654-T1	KH DOMAIN CONTAINING RNA BINDING PROTEIN	ScLC4GM_1681	38170666	38258334	-

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_041654-T1

ATGGCTTCGAACGTTGTGAATTCCTTTGTAGATATCCCTCAGGACAAGATAGGTTTAGTGATTGGTAAAGGAGGGCAGACCATAAATAAAATAAAAAGTGAAACAGGAGCAGATGTACGTATCCAGCGCGATGGACGCGCTTCGATACGGGGTACGGAAGAATCCGTACGTGAAGCGGAGAAACGTATTCGTAAATTATTTGAGGTCACTGGCATAGATGGAGAAGGTATTACCAAAGTGTTTGTTCCTAAGCACCTTGTGCGTTTCGTTGTCGGCAAAAAAGGAAATAACATACGGAAGCTCAAAGAACAGACGAAGACTGTTATACAGGAAAAAGATGGCTATTTCTACGTTAAAGGAGATGATGAAAAGCAAAAGAAGAAAGCCAGTCTCAGGATAAAGGAATTGGCGTGCGATGGCAAAAGAGTTTTAAATCTTCCAAGACTAAAGAGGTTTCCGTTCATCGACAGTTCTGTCATTGGCCAGGAAAATACATTTCAGTTGGAACTTGTTGAAAAATCTCACAGAAGATTCATAGGAAAACCACACTACAGGTTGATCTTAAAAGGAGATCCTCTTAATAAGGAGACCGAAAGTATCAACCTCGATAGTCTACGTAAAGGAGTGCTCCAGGTTCTGCGTGAAATCCATGAAGAGAAAAAGGGGAAAAGTCTCAACGTCGAAATGTGGTGTCATTTTGGTCATGTTTACATAGGGAATGTTGAAGAAGAAAACGAGGACAAACTCTTTGATTTGCAAGACATCGAAAGACACCTTGACAAAGCTGAATATGGCTCATCCACTGATGGGTGGCGTACTGTGTTCGACGAAGGAATTGCGACAACAGAATTTGAAATCTTGGAGAAATATCTGTCAGTCAATCCCTATAGGGTGCCTCCTAATATCAGACATGAGTTCGAATTCCTCACTCCATCGCTCCAGAAGATTCGTTTGAAGACATTCCTGGAGATTGAAGGTGCATCTGAGGGCAAGGAATTGAGCTATCGGTTTTCCGATGGTCACCCTGTATCAACAAAGAGAATCATCGCGCGTGATGCTACAAAGGACAACATAAGCTACGAGCTGAGTGTCTCATCTCACAGTCGTGCCATAATAGACATCATGGTTCCCTCCTATCCTCTTGATTGCCATTTCAGTATTAAAACAAACTCGCCAGAAGAGGCTATGACACCTGAGGAGGAAGAAGATAACAAGGTCCTCATCAAATACCTAAATGAGAATTTGAAGCTTGAAGACGGTGAACTAAAGCTACAAGAAAACAAGCCACTACCAGAGGGTTTTAACTTTATGTACCGCCGGCGTTGTGAACGAAGAACGTATCCCTATTTGTTTAAGGACGAAGAGTTCACCGTTACGATGTCAGAAGAAAAGTTAGAATATGTCGCGGAATTGCGATCCGATGACAAGGTGCTTCGTAAGAATGACGTTCACCTACACTGTGACGAATTAGACCAAGTACTGAAGAAGAACGACTGGCAGCCAGATCAGATTGTTGACAAACTTCCAAAGTTTCTGGGCTTCATTAGGGATTTACAAAGGTTATCAAAGGTTGAAGAAACCATCCCGCCAGAAATTCTTGCCCGTGGTCCCGAGGCAATTGAGGCCTACAGGTTGGCCTTGGAAAGTGGAAAAACCAAGAATCGCCGCGTGCTGATCATGTTGATAGGACAAGCAAGGGCAGGGAAGACAAGTGTTTTGAGATCCCTTAAAGGTGAAAATTTTAATGACGAAGAAGACAGTACCGTTGGAATAACACTTGCGAAATCATCTTTCAAACTAAAAGAAGAACCATGGGGTTTAGAAGATAGTTCAAGCAGCAACGAAATTTCCTTTGAACACATCGCAGCAAAAGCTATCGCTGACGACATAAGGAAGAATACTCAGCACAATACCTCGGTCGAAATTCCGCAGAGCAGCAGTTTGGATGTGAAGTACGAGTTGGAGGACGAAAGAGAGAGCGAGGTATACAATATGACAAGCAGCATGTCTGCAATAGAGATTAACAAAGATCTCAAGCCCAGAGAGAATTACAAGACACCAGAAACAGTAGCAGCAAAAGTGTTAACAAGAGGTGAGGAGTTCGCCATAAAGGCAAGGAAAGGGCTTTCTAATAACCCTTTCAAGGTTCCTGAGGACATTGCCAAGCTAGCTGCGGGTATATTTCGACAAGACGAGACTGATGTCAAGGTTCCTGAGGACATCGCCAAGCTAACTGCGGATAGATTTCAACAAGACGAGACTGATGTCAAGGAGAATAATATTTACTTTACTGTACTCGATTTCGCTGGACAGTCAGTGTATTATTCTACTCATCCAATCTTCATGTCACCAAAGGCAATCTATATACTAGTGCACAGCTTGAAGCAGGATCTTCACGCCAAAGCAATGCCGACTGTAAAGCATGGGTCAACAGAACACAAAACGGACGATCAATGCCCAATGACAAATATGAATTGTCTTGAGTACTGGCTCTCCTGTGCTGCATCTTTGAGCATCGACAAGGCGTCAATTGCAACCGCTTCGGACGATCATGAGACTGTTGCAGATAGCAAGTCTCCGCGACCAAGCTCAAGTGATGCTGCAACTGCAAATGAAGTACAAAAAGGCTTCCCGAGAAAAGAAACAGCTGAATCCGACAGCGCTGAAAGTACTACAAAAGCATCAACAGTTTCACTGCCGAAGAAGCTACCACCCGTCTTTGTGACTTGCACCCACGCCGATGACCCATTTGAGGGAACAGTTCCAACGACAGTGGCAAGAGAAATCCTTGAAACATTAAAGTTAGACAGGCCATTTGGAAAACATGTTGTTCATTCAATATATCCAGTCGACAACACACGTTCTGGAAAGTATAAAGAAGAGGACTGGAGTATCAAACGCCTAAGAAAGGACATTCTTCAAATAGTGGAGGACCTTCCACAGGTGAACGAAGTCATTCCTCTTCGCTGGTTGCAGTTTGAGAATAAGCTCTCCTTGCTTGCCAAAGGAGGCTCCAAGTACATATATTTGAAACAAGCAGAAGAAGTAGCTAGACAGTGCCAGGTTCAGACAGAGTCGACCGATTTCAGAACACTGCTGAACTATCTCCATGACTTAAAGGTTGTTATTCACTTTGAAGATCCCGAAGAACTCAATGAAATTGTGATCATTGATCCTCAGTGGCTTCTGGACATGTTTGTTTCCCTAATTACCGTTCAGCCAATAGAGAAGTGGGATCCAGAAATGATTCTATTCTGGAAAGATCTCGCGAGAAACGGCGTGTTGGACATTGCTCTTGTTAGGCACGTTTGGGAGCATCGTATAGATGACAAACAGACAGAGTCTTTCTTGTCAATCATGCAGAAGTTCAGTCTGCTATGCAATTGGTGCAAGCCAGATGGATCAAAGGTGTTCCTGGTACCCTCGATGCTGCAACATCGAGCAGTTGAAGAGGTAGAGAAGTTGTTCCGGGATCCTGATGTTCCCCCCATGACTATCCGGTTCGAAAGCGGACACCTGCCTTTGGGTTTCTTTCCGAGATTAGTAGTTGCTGTTGCGCAATGGCATGCAAAGAACTGGAAAAGCCACAAGACACCGAAGTTGTTCAGCAATTTTGTAAGGTTCTTTCCCCTTGGTGAAGAATTGAGATTTTCTTTGATTGTCACCTCTGGCATGAGCACCATTACCGTAGGCGTAGTGGATTGTGTCGCCGAACCAAACCCTAAATTGCTCCATCACTTTTGTGACACTGTGCTCGATTTCCTGAAAACAGCACTCAAGCAAATGAAGAATGAGTTTCCATGGATGAGAACCATGGAAGTGGAGTTTTGCATTCGTTGCCCTATTTGCTTGAAGGAAGAAAAGCCCTGCGACAGCCATCAGGTCAGAAGCTGCCCTCGTGACGCATGCCTGCATTACATCAGTGAGGATGAACTACGAGATCCAAGACCACATTGTGACCGGAATCCTACAGTGCGTGATATCACCATAAACACAAAGTTGTTCTCTATGTGGTTTGAAAGTCATGAACAAAGGGTCTCTGCTGAGAACAATGTTGAGACTTCTCAAAACGAGTCAGATGTATCCCTTGATGTTGTTGGTCAAGGACAGGCTATTGATGAACAGTTCGATGATGAGGACAATTGCTTTTGGCGTGATGCTGACGCCGCTGCAGCTGCTGAAAGGATTCCAGTCTATCTTGGCATTGACAGAACATCTATAGAAAGTCCACCTGAGGAGGATATCGGAAAGGTTCGACGATTTTGCTCAATGCTCAAGAGAAATGGAAGAACAGATATCGTGAAATTATTAAGAGAAAACCTGCGCAGTGGGATGACAGGTCCGCTTCAATTTTCTGAAACTATGCTGGTGAGCAAGTTGCCTTTGATGACACGTCAAGGAGTGACACGAGCTCTTTGTGGTGGAGATGATTGGAAGAATTTCGCATGCACCCTTGGAATACCCACAGAAGAAATCCCTTACTACGACAGAGCACAAAATCCTGCTGAAAATGTGCTCCAAGATATTCTGGAAAAGCGGATTAATCTAACAGTTGGAGAATTGTATGATGTCTTGACGCAATGCGAGCTGAATGCCATTGCTGACAAACTATGA

Transcript

Acti_041654-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan
PF00531	Death	Death domain	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR004087	Domain	K Homology domain	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-