Gene detail

Detailed information of Acti_041581-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_041581-T1	EUKARYOTIC TRANSLATION INITIATION FACTOR 2D	ScLC4GM_1681	35849513	35883776	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_041581-T1

AAAAAAATGGCGGACGAGGATGTTTCCCATTTCAAAGATTATATATTCGAATTTGATTATCTCTGCTGGTATTAGATTGAGGGTATTTCTTCATCATGTTCTTAAAACCTTTTAGGATAAAGACCAGTACCGCTATTCGCGGTTCAGACAGGCGTAAGCTTCGTTCAGAGGTTGGTAGAACTTTCCCTGCCTTGCCGACAGAACTTCTATCAGAGATCATACCTAATAAGGAAGAGATGACAGTAACACGTATCGTGACACATTCTGGTGACAATGTCACAGCCTACTGTCTCAGTGGAGAGCCAATATTCTTTGAGATTGAGAAGACGATCTTTCCAACAGTCTATACCCTCTGGAAGTATACAGGTCTCCTGCCAAGCTTTGCAACATGGCCACCTGTTTTTGAGAAACTAATTGGAGGAGCAGATTTAATGCTACCAGGTGTTATCCTGCCAGCTGGGGGTATTGGAAGCTTTGATATGTTTGAGAAAAACTCACTGTGGTGTGTAACCTTAAAAGGAAATAGATCACCTGTTGCTGTTGGTCTCACTACAGTTTCTAGAAAAGACATGTATCAAGATGACATGAGAGGAAAAGGAGTTAATATACTCCATGTCTATACAGACTACCTGTGGGCTCATGGGAGTAAAACTCCTATACCTCAGATAGACGAAGCTGAAATTGAAGAAAAAGTGAAAGAAGACGAAGAATGCAACGAGGAAAAAACAGACGAGAAGTCATTGGCTGAAGAGGAGCAGGCAACCAAAGATGCCATCTGTGAAAATACAGACCAGATGGAAGGGAACACAGATGTTGAGCTGCTGTTAAGAAAAGAAATGCAAGAGATGACCCTACTTGAGCAAGATGTAAAAGTATGTAGCACTCATGAGGCTACAGCTGACTCCACCACAGGCGAAGCAGAAGAAGAAAGCGGTGCATGTGCAGCATCAGATGAATATTGTGAGTCATTCGAGGTGTGCGAGGATACACTGGTGGCAACTACACCTGATGAAATTGACGATAAAGATATTGTTGTGAAATCTGCAGTAGAAGAGATGGACGACCTAATGGAGTATTGCTTCTTCTGTGCCTTGCTGAGAATGAAAGTTGAGCGAGACATTCCGATGTTAACGAGCGCGTTTTTCAGGAACCACTTGTTACCGTATTGCCCAGAAGGTAAATCAATAGACGTGAAGAAATCCTCCTATAAGAAGTTATCCAAATTTCTACAATCCATGCAAGAACGAGGACTCCTCAAAGTGCAAGAGGTGTCTAAAGGCGTGGACAATATTACGGATATTACTTTAGTTCACGAAGAAATCAAAGCATTCAAGTCTTCCGTAGCAGCCATGCCACCGAAACCCGTGCAGAGCAGCTCTGTCGATACAGCTGTACAAGAAGAGGGTCCGTGTATAGAGGAAATGCTGTCAGTTTCTGCTGCACTGGTTCGAATATTCTCAGAATTCGGTTACACTAAAGGATCGGTTCTGAGCCAGACTGAAACGAGAAAGGTCATAACCAATTACGTGAAAGCCCACGAGCTTGTCTCCAAACACAATAAAAGGTTCGTGATTCTAGATCCTAGGTTAACGTCTGCAGTTGTTAATAAAAATGAAGATATACAAAGTTTACCCTGGGACGGTTTGTTCACAAGAGTGGCAAATAAGATGAACAGCTGCTATAAAATCACTCTTCCTGGACATCAACCTGTGGTTAAGAAAGGAAAGATTGATCCACTAGAAATAAAAATCGAGCAACGCATGGGAAACAAAAAGGTTACTTTAGTACGTAACCTGGACGCATATGGCATTGACCCCCAGGAGTTTGCACATAGAATACAACTAAGAGCTGCCTGTAGTACTTCAGTGAGTCAACTACCTGGTAAACATAAAGTTCCCGGGATGCAAGTTCTTGTTCAAGGAAATCAAATTCATCTTGTTGCCGTTGCATTATTAGAAGATTACAGAATTCCTAAAAAGTTCATCACAGGCTTGGAACTGTTGAAAAGTGGGAAGAAAAAGAAATAACTGAAATAAAAAAAACAATTGCAGATCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01253	SUI1	Translation initiation factor SUI1	Domain	Interproscan
PF17832	Pre-PUA	Pre-PUA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001950	Domain	SUI1 domain	Interproscan
IPR003121	Domain	SWIB/MDM2 domain	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR036877	Homologous_superfamily	SUI1 domain superfamily	Interproscan
IPR036885	Homologous_superfamily	SWIB/MDM2 domain superfamily	Interproscan
IPR039757	Family	Eukaryotic translation initiation factor 2D	Interproscan
IPR039759	Domain	Eukaryotic translation initiation factor 2D, SUI1 domain	Interproscan
IPR041366	Domain	Pre-PUA domain	Interproscan
IPR048247	Domain	Eukaryotic translation initiation factor 2D, N-terminal domain	Interproscan
IPR048248	Domain	Eukaryotic translation initiation factor 2D-like, PUA RNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12217	EUKARYOTIC TRANSLATION INITIATION FACTOR 2D	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001731	Biological Process	formation of translation preinitiation complex	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-