Gene detail

Detailed information of Acti_041265-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_041265-T1	NADH-CYTOCHROME B5 REDUCTASE	ScLC4GM_1681	24855022	24877128	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_041265-T1

ATGGGTTGCATTGACGTCACAAGAAAGCACGTGACCACCAAGCAACACTCAGATCTTGGCATGCACATAGCAGATTATCCCATTATTCAGGATTACGTTGGCGAAGGAATCATCGAAACTAACGCGTCACGCACTCTCCTGTTCAGCGTCGCCCAGGCGATGGATAATGTGACCAACAACAACGATTGGAGTATCTATGGCAACGGGGCAAGCCCTATTCCGAGACGAGGTATGCTCCATCATTGGTGTTTCCAAGTAAAAGTCAAGGCAGCAGCTGTTTCAGGATTTGTTAGTGAGAAGATGTTACATGCTTGTGGAGGGGCAGGGTACAAAACAGATCTAGGACTCGAAAGGCTCTACAGGGACAGTAAAGCTGGTTGGCTGATGGGAGCCAGTAACGAGGTGCTGAGAGAAATCATTGGCAAGACGGCACTGTTTGGGTTACAAGCACTTGATATATGGTGGAAAGCTCCAAACAAGAAAGTCATCACAGCCGAAGTTAGAAAACTAACAATGGACGATAAGGAATCACTTGCTAAAAAGCTACTCGAAGAGGTTGAAATGGAGAAAAAGAGCAAAGATAGACTCAAAACCTACCAGGATTCAGAGTTTGACAATCCATTCAATACAGTTCCCGCTGCCAAGAAAGGCCCATACGTTGATGTCGATGGCATTGAACACAAACCAGCCCTGAACCCAGACACCTATACTCCACTTAAACTGGAGGCCAGAAATATCCTATGGGGAGAGGTGGCGGAATACAGGTTCTCCCTACCCCACCCTACTGATCACATCGGTTGTTTTGCTGGTCAGTATGTTAAGGTTAAGGTGTTCTCTGATGGACCAGGAAGTGTTGCGTACGAGAGGAGTTTGTCTCCCGTATCATCCACGGTCGGGTACGGCGAGGTCATGGTAGTCCTTAAGCACGAGACCCACGGACCGCTGTCTAACAAGTTTCATGCTCTACAGTCAGGTGACGTTGTACAATTCAAAGGCCCCTGTGGTGGATATGAGTACACCCCGAATACTATCAAGCACTTGATCCTGTTGTCCAGCGGTATTGGTTGTACGCCTGCCGTTCAACTCCTCCGTGACGTCACAAAGAACCCGGATGACAAGACCTTGGTCTCAGCCCTCTTCTACGCCGAGCGTGAGTCTGAAATATTGTACGAAGATGAGCTCTTTTCTTACCAAGAAAAAGACTCCAAGATAAAGGTGTCTTACACCCTGGGTGAGGTAACAGACATCCAGTGGAAGGGAGGGGAGGGATATATTGATACGGAGATGATACAGAATGCTCTCCCTACCCCCAAGGAGTTCAGTTTGTCACAGATTCTCATATGTGGTGGACCCGCCATGGTGCTGTCTTCGATCCAGAGTCTGTATGAGTTGGGATATCCTAGTGAAAAGATCTTTGTCTACGGTCCGTTTGGTGTTGAACAAATCAGGACCGTGTATGGTCGATATGCTGAACTGTCTGCGCACAAAATGGATATCGAATACATCACATCATTGTGATCGAGACGGAACCTCGTCCCCAGGGTCTTCTCAGTCAGATCCAAGATGGCGGCTACTCCGAGAGAAGTCCCTGGTAAAGGCCGAACTATGACATATTCTGATTGGCTATTCGGTTATGACGCAAGGTTATTTTAACAATACTTTTTATTGACCAAACGGGCTGAGACCACGGAGATGATTCATATATAGTTTAATTTTCTCAAATTTTCTCAATAAAACGATTTTTAATAACCTTAAAACACGTTGTGTAGGTAGAGCAATAGATGAAGTGCATTACTGGATAGTTTTCTGGTAAGTTTCATCAGTGAGAAAGCCAGGAGAAGCCGTTAAATCTGAACATGTGCTATCGATCTCTTCGCTTCAACGCTATCAGAAAATGAATGGCTTTTTAGGATTCTCTCCTAGCTTAGATACATCCTGGTAGCTTTGTGATACCGTTCCACTGTTCCTTTAACCAAGTACACTCCATTCCGAACTGTTAGTAGACCTGTTTTCAATTCGCTCGCTTCAGCAAAAAGCAATTATTGGTATTGTCTCTAAACAGTTTCTGGTTGTTATTGGTGTTATTTTTAAAGTTTCCCTAAAAAAAATCATTCCCCTCGCAAAAATAGAAAGGGTGGAGAGTTTACCTCGAAAATCGATTCGAGAACCTGAAACAAGCGGCACAACTGCTAAATTTAACCCAAATTTTTTTTTTGTGGAAGCACTCATAATTTAAGGCTTTTTGAAGTATATATATCTATCTATAGAGGGCTGGAATACAGTATTAAGTTCGGAAAAGACTTAAATCAGCGCTTTCTCGAAGAACGGAGTCTGGCAAGTTATTTTGCTGGGCAATAGCTTCATATGTTCACGCCGGGCAAGACTTGTACCGTGGGCTCAAGTAGTGTAAGCGACGTGTTCTGTTTGCCCGTGCGCATCACGCATTTCCGGTAAAAACCGGTTACTATGTCAAAGAAACCGTTCTACAACGGTAGACTGGGCAGAGTTTTCCTTCTTCTCTCTTTCTCTTCATCTTGGGAAGGAAGAGACTGACTTCTTTCTAATCCCACAATCTATTATCTACTTAACAAACGTGAAAACCTGGTCACTAAACCGGCTAACAAAGGATCAGCTATCGTTCATGTCACGAACCGCGACCGGTATATACATTAACGGAGGGTCTCAATTGGGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00175	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00970	FAD_binding_6	Oxidoreductase FAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001433	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR001834	Family	NADH:cytochrome b5 reductase-like	Interproscan
IPR008333	Domain	Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR017927	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR017938	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR039261	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19370	NADH-CYTOCHROME B5 REDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-