Gene detail

Detailed information of Acti_041170-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_041170-T1	PROLYL 4-HYDROXYLASE ALPHA SUBUNIT	ScLC4GM_1681	21339627	21370792	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_041170-T1

ATGGCTCATTCGAGACGAGAGAGGGGAATTAAGAGTGAGAAATCTAAGAAAAGTACTACAAGAAAGACTTCAAAACCTACTCAACCTTCTCCTACGTTGATATTGTGTGCTACAGCTTGTTTGGCAATTGTTGTCGGCCTGTACTTCACGAATAAAACGAAATTGCAGATTAAGCATCAAGAGGCGAACGAGGAGGCGAAATTTAATCCTACGTATACCAAGACAGGATCTCAAGCAACCGTTAAACCTGATGTTAAACCAACCAAAATGCCAATCGTTAAACCAACCGTGGCCGCGCAGAAAGTCAAACCTAAGAAGAATGAAAAAAAGTTAACTGAAGCACCTGGGAAGTCAGCTCAAGATTCAAAAGTTAAGTTTAAGACTAAGACGAAGCGAGATCCAAATGCTCATTTTAAAACATTGCCAAGAATCGATGGAGTTAACGTCGGACATGTTCAAAGGATAGAATTGTCGCCTGGAAAGATTTATGAGGTGAAAACTAGAAGTCTAAGGCCTCTAATCTTTGAGATTCCCGAATTTCTCACAGACAACGAATGCCAGCAAATTATTGACCAAAGCATCCGGCAGGGACTGGAAACTAGTGAAGTCCAAGACCCAGAGACTGGAATCAGCATTGAACCAACGACGAAGAAGACGTTCAGTGAATGGGACTACAATGAGGATGGCATGGTCAGCGTGCTAGAGATTATGCACAATTTAATAGATCTCAGTGACTTGTATTTCACGGAACAAGATGTCATGCAAATGTTCAAAGATCTAAATGTCGATAAAAATAGGAATGGAGTAATGGACCTGGATGAGTTCTTGCACGTGACAACAGACCGTGTCATGAGATATCTTCACAAACTGGCACAAGGTCTGCCAAGAATCAAGAGTCGAAACAGCCGACAAAACTGGGTGGACCATACGGTGATAGAAGGACTAGACGAAAGGGTCGGAGCTCTAACAAAACTCCCGATTTCTGTTATTGAAGGCAGCGAAAAACTACAGGTTGTTAATTATGGGCCAGAAGGTCACTACCACTGTCATCACGACTCACAAGATATCGACAACACCGTACCGTGCTGTTACGAGCACGACAAACGGCACTGTAGGCTCTGCAGGTACATTACAGTTTTGTACTTCCTTAACGACGTCGAAGAAGGAGGAGAAACAGCATTTCCTGTCGCTAACAATGCGACGTTCAGTATTGAGGCGTGGGCGGGAATAACAAAATACCGCTGTGACCTCAGCCGACACTGCCATAAAGCAAACCTATTTGTCAAACCCAAGAAACGAACAGCAATCATGTGGTACAACCACTTTAGGGACGAAAAAACGGGGTGGTTTGGAAGACTGGACGCTACTACATATCATGGCGGATGTGACGTCATCAAAGGTCGAAAGTGGATCGCTAATAACTGGATTAATATTATGGGCGAGTCACGTGACACAATGTTCTTACATACGAACCCGAAAACAAAAGTAAGGCTGTAGGGATTCGCTGACATATCGGTGAAAAAATATAATTAACTTAAATTGATATATAATTATCATTTAGAAAGTTGGCAACATTGCCATAAAGGTATATTGAGAATCTGCATATTAAGAAGTGTATTGAGATTATTCATAAACGCATCAAAGCGAGGCTAGTTGTCCCATCTTGTCACAGGAAGAGAATAATCTACAGTCAATGGCGGGAAATAACGTTACTTACCTCAAGGCACAAAAGAACACAACAGTGTGGTACGACATAAACTAAGACAGTTCTGATCGGCTCCAATGTTGCGATCTATGGCACGACTGGCCTCGCTCTGATACCATTGTTACCAGACTTCTTACCGCGCGGGCATGAGATATTAATACGGTGAATAGCTCAATAATATATAATCAGAGAATATGTAGAAGTTTTACCGAAATTGTATCGCACTTTATCAAATAAAGTTTAGTTAAATTTAGAAACAAATCAGAAGTATGTTTATCGTTGATCGACTGAATATCGATCCGCCATTTTTAATCTAAAAAAATAACATACAATCTTGGACAAAACCTGTTACAACACTCGTTTTCCCTAAAAGGTAACCACAAAATCACTCCTGATTTCCCCGTTTCTCCAGTTCCATGCTATTGTTTTTAATTTAGTTCAGTTGATTGAGACGAATGGGAATATGTGCCTTCTCAATAATGAAGGGGGAGAGGAAGGGAAGAAGTACGTAAGAATTTTGATTGTAGAATTCCAGAATTGTGGAAAGAGGCCTTTCTTAGTCTTTCAAATCTTCTATGATAAAAGTTTCTTTAACAAGTGCTTAAAGTGCACGGTTTTAGCTTAAAGTGCATGCATCTAACGTTCATTTTGTTATCACAAATATCGATTCTACATCAATTGCCGAAACAGTTAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13640	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR006620	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR044862	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR045054	Family	Prolyl 4-hydroxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10869	PROLYL 4-HYDROXYLASE ALPHA SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004656	Molecular Function	procollagen-proline 4-dioxygenase activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0018401	Biological Process	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	Interproscan
GO:0031418	Molecular Function	L-ascorbic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-