| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Acti_040685-T1 | COLLAGEN ALPHA | ScLC4GM_1681 | 4327270 | 4344891 | + |
| CDS | |||||
| Acti_040685-T1 | |||||
| Transcript |
| Acti_040685-T1 |
| Protein |
| Acti_040685-T1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00040 | fn2 | Fibronectin type II domain | Domain | Interproscan |
| PF00092 | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| PF00754 | F5_F8_type_C | F5/8 type C domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000421 | Domain | Coagulation factor 5/8 C-terminal domain | Interproscan |
| IPR000562 | Domain | Fibronectin type II domain | Interproscan |
| IPR002035 | Domain | von Willebrand factor, type A | Interproscan |
| IPR008979 | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR013806 | Homologous_superfamily | Kringle-like fold | Interproscan |
| IPR036465 | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR036943 | Homologous_superfamily | Fibronectin type II domain superfamily | Interproscan |
| IPR050525 | Family | Extracellular Matrix Assembly and Organization | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24020 | COLLAGEN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0062023 | Cellular Component | collagen-containing extracellular matrix | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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