Gene detail

Detailed information of Acti_040103-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_040103-T1	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	ScLC4GM_1636	138440520	138454810	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_040103-T1

ATGATGAACTGCACGGGTTACACCACACACAAGATATGCTACATATCATGTCAGTTAGGATACGAGCTCCGTGGGTCAGCATCGCGTGTCTGTCAACCCGATAGAACATGGAACGGGAACCAAGCCACGTGTAATGTACAGCACTGCTCTCCACTTCAGTCACCCTACCAGGGCTTCGTCCATTTGCCATGTACAACCTCCTATAGCTCCCAGTGCACCCTGGGATGCAATCCGGGTTATTATTTGAATGGCTCAGCGAGTGTCACGTGCTTGGCGAACAAACAGTGGAGTACAGACCCTCCGCAATGTGAAGTGATCAAGGTATGCCATCCTAACCCTTGCCAACATGGCAGCTCCTGTTTACCGTTTAATCAAACTTCGTTTACCTGCAACTGTACCGGCACGGCGTTCAAAGGCAGACTATGTGAGGTGGGCGTGATCATCACCCCGAAGTATCCAACAGTTCTCCGCGGTAAAAACACCAGCGTTACATTTAAAGTCTCGCCGTCCTCACAGGAAATCACCATCACCCCATCTTCCCCCAGAGTAAATTTCATTCCTCCATTTATGACGATCAAGCATACAAACGCCACTTCCGGTCAGTATATTTCCCTCCAAGTGACTGTTACTGGGTTAGAAGCTGGTGTTCACGTGATCACCTACACAGTATCAGGATCTGGGGCCGACACCTTCGAGGCAGTGTTCCCGGATGTTGTGACAGTTCTTGAAGGTGGTGAGCAATGTGGTGTTAATAAGGCTACTCCGCTGTCTTTCACTTCTGGGTGTAACAGACTCAACGTTGCCCAATGTCCTAACGGAGGAACTGAGATTTCAGCGATTTCCACTCAGCCATGGAAATATAACGGGAATATCTATAAAACTAAAGGAGTTGCTCATTTGGCGGTACCTTCTCTAGAAAAGCTACCACTAGCAATAATGGGTACGAGTATGGAGTCAGATTACGTTGTGGCAGACCAGATAGCTATTGGCGGCGTGCAGGTAGGGACGCAGTGTGACACGACTACAAACAATAATACTCTTAATCTCCGATGTCTTCCATCCAATTCACTTGCCTCAGCTTACCTCGCTGCTAGTAAAGACCACTTTCCTGATTGGTTAAATATGACAACGAGTAAATCCAACGCAACAGAGTGGGACACCACAAATTTGATGAGCTATCTCTGGACTGGAAAGCAGTTGAAGTCAGTGGCCGGGAGATTAGGCTTCACTGTGCACCAGACCCACATTTACTCGGTACTTCTTCATGGGGGCGCCTTGAAGATCACTCTGGATAACGACACTACGACTTTACCTGGAAAATCTGGACATCAGATGGTCGCCGTCGATCTTTGTAACGGCAAGCGAGGTGATGCTTTGGTCACATTCAACCCTTATTCAAGCGAGGCCTTGAGAACGATTTCTCTATTGCGTAAGCTGTCCAAATCAGGTCTGGACGTTAAAGTAGTCGGCATCCAATTCTCTAAAGGAGGCTCACTGCGTACAACCGAACTGCAATACTGGGATGGTGACGTTGTGAAGGCAAAGAAATCCGAGTCAAGTCAAATGGAGGTTGTGGGAAGAATTCGCTGGACTCTCTTTGAGTCGCAGTGTTCAGTGGCAGTGAATGTGACATTCAGTGGAACTACGTCTGTTATTTTGCCTTCAATAGACAACAAGTTTTTTTTTACTTCCAACGAATGGAAGGCTGTTCTTCGGGGATCATTACGGCTTGACGCCAAGGTTAATGCTGTAAATCAAATTGTTAACATACCGCTGCAGCTGAACAATGTGAAGGGATATGCAACGACTGTGGCAGAGCAACCGATAGCGAAGAAGGGCTTATTCATTCAAGGATTATTTAAAATTAATCCCTTTGAATCTAGTATGTTTCACGCCTACGTCACACCCGAGAAAGAATCTTCTGTCTTTGTTTACAACAACATGCACACTGACTGCTTGAGCTCGGCCATGAACAAAAATATGTCAAAGAAATGGCGCGTCACCGAGCTTGGAATTCGATTCAAAGGAAAAGCAAAGTTTGGACCCCTGAGCTTCCCAAGTGAGCATGTTAAATTCCTGGTCTCCAAAAGTGACAATGATTGTGGCCGAAGCGGTTGTGGAGCACACGCAAAGATTATTTTAATTTTTTTCAAAGAAGTCAAACACGGGAACCTATTCATAAGTAGGCCTGGTCCACAAAACAACCTGGTTATTAGTTTTCCCAGAGAGGACCGTTCACCAACTGCCATCCTCAACACATCATTAAACCTGTTAGGTGATGCTGTCCCAGTGAAGGTTCATATTTCTAACGACACCATCTCTCTTGGACCCACCATTATTAAGGTTTACAGGCAGTTCATGGCTACCGTCAACATGTCTGCTTCTATGGATTCTTGGGATTCTATGAAAGTTTTCACTATGGGTGAATTTCAAATGGGGAACGAAGACGATCTTGGAAGCAAAATTGAAACTGCGATACACAACTACGTCACCAAGGTTACCGAAAAGGTCAAGATTCGGCTCGAAAAAAGCACCCAGGCTCATGAGCGCGCTAAGACTAAATTAGAGAAAAGCAGGGCACAGCTTTCGGCGACACAAAATTCTCTTCAGAGAGAGCACAACAAGTATGGATCACTAGTAAATAATCTTCAGCAGGCGAAACATCAGCTTGATACTCTAGAGCGTCAAGTTTCTAATGGGAGGGCTGATGTGCGTAGTCTTAAAAGTGACCTCGAGAATTTGTGTCGCGTTGAAAACTGTCTGTACGTGTGCATGCCGGGAAGTGCATGTTCCACGTGTTACCGTGACGTCACCAGTAAAGTTAGAGGGCTGTGTCACGCCACGTGTCACCACACGCGTCAAGTAAGGCGTGATCCCACGAGTGTGTCGACAACGTGCGAGAAGAATAGCTGTAAAAGAAAACATGCTAAGCACGGTCTAATCGAAGATTTGGGTCGAAAAATAGATTGCATATTTCAGAAACATATCAAAGGCTTTATTAAAGGTGCTTTGAAAACCGCATTGACCATTGGATTAACGGCAGTCGGTGTTCCTCCACCGGCGGCAGGAGCCATCGTTGGTGGTGGTTTTGCGCTTCTAGAAGGAAAAAGTTTGGAGGAAGCCGCTAAAGAAGCCGCTGTTGGAGCTGCAATGGGATTCATTTTACCTCCTGGAACTGACAATACTAAAGAGGTTCTCACAGGCGCAGCAGCTGGATCAGCTATTGGAACAGTCGAAGGAGTGACAGGCTGTAAATCTGGGAGTGGAAGCTGGGAATGCCGAGTAGACATTATATCTTGTCGTAAGCCGATATTCAAGTACGATTACATCCATACGCCTTACACTTGTAAGAATCCTTGTGAAAAAGAGGTTGTCAAGGAAACCATCGTGAGCCAGTGCTGCTCTGAAGTCAATTGCGCCTCTCGAGTTAAGGACATGAGATGCTTGCAACAAAACGCTATTTGTCGAGCGATCAGGAACAGGACACTTATTCGACTCGATGAGGTGAGATCGGATCTTACTGGACCTCTCATGAAACTCGAACAGGCAAGAAAGGAATCCAACATGGCTGATATCAAGGTTAAAAGGCAGAGAATTAAGCTTGAGATTCAAACAGCCACGCGTGACTCAATTCAACGCTCTGTGCAGGGTTTAGAAACTGCAGTTAAGATCACCGAGAAGGCGAACCTACAAACCAAAAGACTCGTCAAGGATGCAGTAAAGCTTGGAAACTTGTTGAAGTCCCACAATGGCAGTAGACTAGTGAAATTCAAGAGAGCCAGCTTTAACATGTCACTCACAAGTGGATCAATTAAACGTCTACCTGTAAAATTGCTGCTGGAAGACCTCACGAAAAGAAGGACGAGAGAATTCATGATGGTTTTAGACTCTGAGGGCGTGCAAAACTCACTATCACGTACCTCTCTATCTGTCATACGGGAACTCTATGGAAATGTGTCACGTGTTTTCCGTGGTGACACCGCTGGAGGCTATAACTCTGGCTCGGAACGTAAAAGACGTTCTGTTGGTGATGATGATAAAGATCGCACCTCAGAAACTCTTGCAGAGTACAAAGAGAAATGTTCTCTGATAAGAAACTACGAAGGAGGACTAACAGATATCATAACTTCGCTGTATAATACCACTACTGATATACTCTCCGTGTTACAAAGTGTCTCCAAAGAAAATCCAACAACTCAGTCTTCCCCGGTTGTACAGCGTATCGCATTTAATGAAACCGTAGTTAGAAAACTGAATATGACGGTAGGCGATCTTGATGACTTAAACGGTGACGTAGCTGTTTCACATGATGAAGAAGTACAAGAGTCAATAGAAATGCTTCAACAGTTGAGTACAGCAAGTGTGAACAAAGTCAAATCGACAATGGCAGTAATCCTTACGGACTGGCAGTCCAGCTTGGACAGACTTCTCAACGGGTCATCCCTCGAGTGCGCCGGGTTGAATGACTGCATTGAGGATATATTTGAACATCTGTATTCCATGTTCCAAGGAGTAAACGTTCCACAAGTTACTCAAGTGATAAAGCTTATTAGACAAATGGAGGTGGAGTTTGAGATGATTATCAACAATGGAAACATGACGGTCAGTGAGGCGGCGCAGAAGTCATGGTTAATACTGGGTCTCCTCCGGCAAGCGAGAGACGTGAAGATTTTCTGCGCCATTGCACCTAACATAACGTCACAGCCACGTACTTTAACGGAACTGTCTGCTGGCAGCCCACTCTCCTTGTTTTGTTTCGCTACTGGTGACCCGCAGCCATTTTACCGCTGGAGAAGGAACGGGATATTTCTACGTGGATATCGAGAAAGGGTGATGAATATCGAGTCTGTGAGAAAAGAGGACGCAGGGAACTACACATGCGAAGCTTACAATCACGTGAGTGTTCAGAAATCGTCTATTGGTCACGTGATAGTTTACACTGCGCCCAACATCACGGAGCAGCCACCGGAAGATGTTGAAATCCCAATGAACAGCCAGATGGTTTTAATCTGCAATGCTACAAGCACCGACATACGTTTATCGTTCAAGTGGATGTTCAAATCGATTGGATCCCAGGATTTTTCTCCACTGGAAAACGAGTCGTTTCCTGTGTTGCAGATTGATTCAATGAAACCTGAAAATGGGGGATGGTTCAGATGTAACGTGTCTAGTCGCTATGGTTACCGCATGTCACGTGAAAGTCGCGTAAGAGTCCTCTACTTCTCATTGGTAAGACCCAGTTTCAAGATCGCCTTTGAGGTCAGTGGTAATGCATCAGAGAGTTCCTCGCACATGCGTACTAGACGAGCAGCTGATGATCCAGACATGACCCCATTAACAAAAGAGAAAGTGGATGAGATAAACAATGCAATTAGACAATCCTTGGAAGATATATTCACAACAAGTGCTGGACTTCCGGTAGATGCTGTTGTAAGCTACAACATAACTCGTTGCTTGGTTACAAGGGGGCAATATCCTCCAATATTGACCTGTAAGATCAACCTTCACATACAAGGCCTTAACATGTCGCGTTATAACGTGTATAACCACACTGAGATGGAGAACGCCATGATCGTGATGGAATCAGTAAAGCAGATAAAGGGTGCTATTGCTAGCTTGGTGAACCGCTCGAGGTTAAGTGAGGGTTTACCTGTTCTAGACGCACAGAGTTCTGTATTAACCATCCAGCACAACTCCTGGGAGATCAAGGGCTACGTGGGCCTTTGTACTGCTGGTCAGCGGTTATATCATAACCAATTTCAGTGCGTTAACTGTCTCTCTGGAAAGTACGGTGTGGATGGCTCATGTCGCGCATGCCCAGTAGGATCATACCAACCCAATCAGGGACAAACCAACTGTATCACGTGTCCTGAGGGCCACTCGACCCAAACTCAAGGAGCGGAGAGCAAGGCAGCGTGCACAGAAAGTCCAACGAGGCAAACAACCGCCCCTCCCACCCCTACTAGGATCTACGTGATCAGCACTTCATTGACATTGAGCTACAAACCAACAGAGAGGCAGCCTTCTGTAAACAGGCTCGACAGAGAAGACAACAAAAAGGGGCTCAAAATTGGATTGAGTGTAGCAGTTATCATGATTGTGCTGACAGTCACAGCCATCGTTATCCTCATGATTCGGCGCCGCCGACGTGTCAAGTCAGTCAAAATCAAGGAGAAGACGAGCAGTCGGAGGGAGCTGACTACCAAACAGGAAACGGCGATAGAACTTGGCGATATCGGCGGTCAATCGTTTGAAAACCCCAGTTATAGCACTGGAGAAAAAACATTTGCTACCTAA

Transcript

Acti_040103-T1

Protein

Acti_040103-T1

MMNCTGYTTHKICYISCQLGYELRGSASRVCQPDRTWNGNQATCNVQHCSPLQSPYQGFVHLPCTTSYSSQCTLGCNPGYYLNGSASVTCLANKQWSTDPPQCEVIKVCHPNPCQHGSSCLPFNQTSFTCNCTGTAFKGRLCEVGVIITPKYPTVLRGKNTSVTFKVSPSSQEITITPSSPRVNFIPPFMTIKHTNATSGQYISLQVTVTGLEAGVHVITYTVSGSGADTFEAVFPDVVTVLEGGEQCGVNKATPLSFTSGCNRLNVAQCPNGGTEISAISTQPWKYNGNIYKTKGVAHLAVPSLEKLPLAIMGTSMESDYVVADQIAIGGVQVGTQCDTTTNNNTLNLRCLPSNSLASAYLAASKDHFPDWLNMTTSKSNATEWDTTNLMSYLWTGKQLKSVAGRLGFTVHQTHIYSVLLHGGALKITLDNDTTTLPGKSGHQMVAVDLCNGKRGDALVTFNPYSSEALRTISLLRKLSKSGLDVKVVGIQFSKGGSLRTTELQYWDGDVVKAKKSESSQMEVVGRIRWTLFESQCSVAVNVTFSGTTSVILPSIDNKFFFTSNEWKAVLRGSLRLDAKVNAVNQIVNIPLQLNNVKGYATTVAEQPIAKKGLFIQGLFKINPFESSMFHAYVTPEKESSVFVYNNMHTDCLSSAMNKNMSKKWRVTELGIRFKGKAKFGPLSFPSEHVKFLVSKSDNDCGRSGCGAHAKIILIFFKEVKHGNLFISRPGPQNNLVISFPREDRSPTAILNTSLNLLGDAVPVKVHISNDTISLGPTIIKVYRQFMATVNMSASMDSWDSMKVFTMGEFQMGNEDDLGSKIETAIHNYVTKVTEKVKIRLEKSTQAHERAKTKLEKSRAQLSATQNSLQREHNKYGSLVNNLQQAKHQLDTLERQVSNGRADVRSLKSDLENLCRVENCLYVCMPGSACSTCYRDVTSKVRGLCHATCHHTRQVRRDPTSVSTTCEKNSCKRKHAKHGLIEDLGRKIDCIFQKHIKGFIKGALKTALTIGLTAVGVPPPAAGAIVGGGFALLEGKSLEEAAKEAAVGAAMGFILPPGTDNTKEVLTGAAAGSAIGTVEGVTGCKSGSGSWECRVDIISCRKPIFKYDYIHTPYTCKNPCEKEVVKETIVSQCCSEVNCASRVKDMRCLQQNAICRAIRNRTLIRLDEVRSDLTGPLMKLEQARKESNMADIKVKRQRIKLEIQTATRDSIQRSVQGLETAVKITEKANLQTKRLVKDAVKLGNLLKSHNGSRLVKFKRASFNMSLTSGSIKRLPVKLLLEDLTKRRTREFMMVLDSEGVQNSLSRTSLSVIRELYGNVSRVFRGDTAGGYNSGSERKRRSVGDDDKDRTSETLAEYKEKCSLIRNYEGGLTDIITSLYNTTTDILSVLQSVSKENPTTQSSPVVQRIAFNETVVRKLNMTVGDLDDLNGDVAVSHDEEVQESIEMLQQLSTASVNKVKSTMAVILTDWQSSLDRLLNGSSLECAGLNDCIEDIFEHLYSMFQGVNVPQVTQVIKLIRQMEVEFEMIINNGNMTVSEAAQKSWLILGLLRQARDVKIFCAIAPNITSQPRTLTELSAGSPLSLFCFATGDPQPFYRWRRNGIFLRGYRERVMNIESVRKEDAGNYTCEAYNHVSVQKSSIGHVIVYTAPNITEQPPEDVEIPMNSQMVLICNATSTDIRLSFKWMFKSIGSQDFSPLENESFPVLQIDSMKPENGGWFRCNVSSRYGYRMSRESRVRVLYFSLVRPSFKIAFEVSGNASESSSHMRTRRAADDPDMTPLTKEKVDEINNAIRQSLEDIFTTSAGLPVDAVVSYNITRCLVTRGQYPPILTCKINLHIQGLNMSRYNVYNHTEMENAMIVMESVKQIKGAIASLVNRSRLSEGLPVLDAQSSVLTIQHNSWEIKGYVGLCTAGQRLYHNQFQCVNCLSGKYGVDGSCRACPVGSYQPNQGQTNCITCPEGHSTQTQGAESKAACTESPTRQTTAPPTPTRIYVISTSLTLSYKPTERQPSVNRLDREDNKKGLKIGLSVAVIMIVLTVTAIVILMIRRRRRVKSVKIKEKTSSRRELTTKQETAIELGDIGGQSFENPSYSTGEKTFAT

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF07699	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011641	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR050350	Family	Complement & Cell Adhesion Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19325	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-