Gene detail

Detailed information of Acti_038556-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_038556-T1	UNCHARACTERIZED	ScLC4GM_1636	89041450	89097315	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_038556-T1

CCCGACTTTATTACAGTTTTTAGCACACAGTACAAACGTATTTTACTGATGCAAGTTTTTATCAACGTAAAGTTTTAACATGGAGGACAGCGATAGCGAGACAAATGGTCCCTCTGAACAAGACTTTCAGTGTAGCTGTTGCTATGAGTTGATGGTAAACCCCACCACCTTGAACTGTGGTCACAGCTTCTGTAGGTTTTGCCTGGCCCAGTGGTGGTATTCATCCAGGAAGACAACATGTCCGGAATGCAGACAGTCCTGGCATGGATTTCCTAATGTTAATATTCTCTTAAGGAAAACTATCAAGAAGCTCTTTCCTTTAGAGGTATCCCAAAGGCAATTTACTACTGAGAGTTTAAAAGGCTATGCTGAGATTGTGGATAAGTTTGAGACTTTTGGACGAAAGAGGCTTGGCCAGCGACAGAGGGGAGATGGTGGGGAGCATAACAGGAGCCGATGGCTGGTTGTGACCAAGAGTGTGGCTCTTGTGGCTGGAATAGTTGGGATACTTATGTTTTTCTATGACCTGTTTGGTATTTTAACCTCTACCAATGAGCCTCTAGTCAGTAAACCTGTCACGCTGTGGACACCTGAAGATGTCTCCAAATGGGTGGCCAGCTTGGGACCATGGGCCAAAGAAACTTATGAAAATAAGTTCCTGATGGCTGGAATAAATGGCAAAATACTAATAACACTAGCAGAGAAGGACTTAGAGGAACCTATTCTTGATATAAAGGTGGCAATACACAGACGTGCATTAATAAGGGAACTGGATGCTGTGAGGAATCTTGGTGTGAAGCCACCTACTGATTTGTGGGAGTACAAGGCGGCACACCCGGCCAGATGTATGTTTCTTCTTTGGGGTTTACGTGAATTCCCAAGAGCTACAACACTCTATGCATACTTTGCCCTTCACGATGAAATGTTCATGCCATTATTATATCACACATCTGAACATGAGGAGGAGGATTTTACTCTGGATCCAAATGAACCATGGCATCCTTCCACTTCAGAGTACTTCAGGTTTGTTGTTCGTGTACTTCTGACACCATACTACCTCCTCAGCAAGTTTGCCTTTAAGTGGTTGCATGTGAATTCGTGGACGGTAGTCATCACTCTGCTGTTCTGTGTGCCAATGACGTGCAATGAACTCATCAAATCCAAATGGCTGCTATTAGGAGGGTGGAAAGAACTCCCAAGTTTGATGTGGCAGAATGTCAGTACAGTGTTGAGCAATGGCCTCCTTCATCTTGTAATTTGGCACTTCATCCCTACATTCATTGCTGATATTGTTTTCTATTGGATGTTGTTTCTCGGCCCTGTTTATGCATGGAATACTTTTAGGACCAGCGTCTATGAGGCAGACCATGGAACTGCATCTCTTGCTCGTGCAGTGTTATTATGGTTGCCACCCTTGTATTACAAAATTGCAAGAGGTCAAGGAGATGATGACACAAAACAGAATCTCTCAAAAAGTATGGGAGTTTACGAAAAGGAACTTGCTGACAGGAAAACAAAGTTCTTTGGAGGAGAAAAACCAGGTATGTTGGATTACCTTATTTGGCCATGGTTTGAGAGGCTTCCGGTGATAAAGGATACATTTGACGTCAACAAGGACACATTTCCGAACCTCTACAACTGGATGCTGGCAATGAAGGAAGATCCTGCAATCAAAGAGACATCTTTTCCTCTGGAGCTCCACAAGAAGTTTATGTTGGATTATTACAAGGGGAGTGAAGAGTCTCAGCTGTATGGGTCTGATCATGAGTGATTGACGTTGGCAAGGAAACCCAAACAAGGATATACAAACAAGTCGGAAAAAAAGGTTAAAGACTTTCATTTGTAATCTTAGTCCAATAATTAATTAGAGTTACAATGTATTTGATTTGTGATTATCAGGGCTCAGGTACCAAATTCTTAGTATTAATTATGATAGGCTGTGCAGAAATAATTTAAAAAATATTAAAATTAAGATCGATAATTATAGGTATATGTATAGTCAAAGATTTGAAGAAGAAAAACACTTTTAAACTTGAATATTAATAGTACTATTAGTCATATTTTCAAAGATAAATAATATATCTGGATAACATATGGCAGGCATTATGATGAAAACTTATGCAACCAGCAATTACAAGAGGCAGGTATATATTGTGTAGGACTGGACTGTCGAGTCAGACCAGGTCGGATTGGGTATAACGATGTCAAGTCTAATTTTCACCACAAATTAAAGTATTCTAGATTGCTTAGGAGGAGACTGTGTCACCGAAATGCAAAGTTTTGCACTTTGAAACTCTGCTTCATGAAACCCTTCGAAATTGTTCAAAACTTTCGCAGACCGTCAGTGGCCATGTTGGATTTTTCACACAGGTAGCCCCTGTTTTTTTTTACACAGGGGGTGCTTGGCAGGGATTTTGCAAAGTAGCCGTACAGTTTAAAAAGCCATCTCAATTTTTATCCATAAAAAGTGACAAAAACATAGCATGTTATTTTTCAATGATGACAGCACAACAACTTGTAAAAGACTGGTAAATCAATAGAATTAAAATATAATAAATGATATTACACTCTAAAAGGTAACAGGACCTAAAAGGTACAGAGACATTTTTTTTCATTTTCCCCTAAAAGGAGCAAAGTGTATCCCCATGAGTTAGATATAGAGGATTTCCCCTGGGCAGAGAAGATGGCAAGCAAATGGACAGTGAACTTACCTTTATTTTGCAAAATGAAGGATACTGATACTTGTGCTTTATTGATGTGGCATTACCATAATTGTTCATATGGCTTTGTTTACAGTCATACACATGTAATTGCAAAAAAAAACGTTTCAATAAAAACTCACATAAGCTGTACCCCTAACTTTGAGGTTATTTTCAAAATCTGAAAGGTTAAAAAACCTGTGGCTTATACGTGAGGAAATAAAGTGTGTAAAAATATCATGGGTTACTCATTTTTCAGGTAGCCTTGAAGTAAGTAACTTAGTCAATTTAGACGAGTTTCACAATTACCTGCAAAATCCCATTCCATATTTTTTAAAGGAATCCAAAATCATTTAATCTTTTATTAATTGTCATTTTTTAAGGACCCTCAAATTAAATGAGGGGTTCTGAAAATATTCACTTTCCACCCCTTCCCCAACCTACTGTCCTCCAGTTTGGTGGTAACATATGTGCAACCTTAGCTGTTTAACAGTAACAGATCACCAAACCCCTGTGTTAAAATCTTAGCCACAACTGCTATAATCCATTTTCTGTTTATTGTAAACACAACTGAAATTAATACAGTGAAGTACATGTACAACAACATTTACTTTGTAAATTAATTCCTATTTTTATACAAAATAATGTACATTTGTTCACTTACATATCATAATACTACATTTTAATTATAACAATCATTTAGATAATTAAATTATAATAACATACATGTTCTTGTATAACTGAATCAAAGCAGACAAAACCAATAATATTCCTCAAATAATATAATACAAGTGTTTAACCAAATAGAGTGATTTAATTGAAAAAAACTTTAAATTAATAAAAAAAATAACCAAAAAATGAGCAAATAGCATGATAATAAATTTATCACCTGCTGGATAATATATTTTACTTTTGGATTTGTTTATTATGAAATTGCTGTTTCTGTTTACAAAATATACTCACAAAAAAACCACATTAGTTCACATACCCCATCAACTGACACAATATATAAACTGCAGTATTTGTACACACCACTCTATATACAAGACATTCAACAACATACAAAAGTATTGGTATATCTCCTACGAATCACACTGAAGGTAACATTTGAAATGTCGCACCAAAAATATTTTGCCAAAACAACCCTTGACCGGACAACAGAGACGTGCCGCCTTGAAAGCACGGACATTTGTGACAAACTGTATATTAAACT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00043	GST_C	Glutathione S-transferase, C-terminal domain	Domain	Interproscan
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF07647	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR004046	Domain	Glutathione S-transferase, C-terminal	Interproscan
IPR010987	Domain	Glutathione S-transferase, C-terminal-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR036282	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15898	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-