Gene detail

Detailed information of Acti_037285-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_037285-T1	RNA-DEPENDENT RNA POLYMERASE	ScLC4GM_1636	51201073	51212707	-

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_037285-T1

ATGGCCAGTTGTTCTCCACATTACGACATGGTTTTGAAATGCAAAAAGTGCGAGGCGTTACTTGCTGCCAAGGATGATCTAATTATCGGCACCGTCCCTCCATCCCAGTCCCATCTAGCGGTGAGGCCTGGGAGGGAAGAAAAAGTTTACAATAATGTAAGGAAAATTGAAAACTTGGAGGCAAATGTTAAGAAAACAGCAATGTGTCCGTTCAAACTACTTTGCAGCAACTGTGACTCGCCAGTGGGATCAGTTGGTCTGATAGAGGGGAGACCTGTATGTTGTTTTAAAGTCGAAGGGATTTTTTTCTGGTGTGGTTATGGTCATGAACGTATACAAGGAAAGAAGCTGAAGCAAATAATTCCAAAGCTGAAATGTGTTGGAATTTGTGAGTTTAACCTTCACCGCACGCAAGAACTTTTAAACACAGAACTCCTCGTCAGGAGGAGACAACAGTTACCTTTAGTATACTGTGATACGTCACAGCTAACAAACAACGACATTGGACAACTTACCCATGATGCACCACGTGATTATCAGCGCGAGTTGTTCCTGTCTGCCATGCGCAGTAATGCTCTTGTGTACCTGCCGACGGGTTCTGGTAAAACTCTGGTTGCGGCCATGGCAGTGAGATGTATGAAAACAATAAACCCCAACAAATTGGCGGTTTTTGTTGTTGACCGCATTCCCTTGGTTTATCAACAAAGTGAATACATGAAGAAACAACTCCCGAAACTAAACGTTAGGCTCTTAGCAGGGGATATGGGACAGGATCCTGGAAACGTGTCGCTGATGAAGGCAACGTTAGAAAAACTTGCTAGAAAACAAGTGGACGTGTTGGTTCTAACGCACCAAATCCTTCTCAACCACCTAGCAGATACTGACGGTCTACTGCGCATGTCAGACATGTGTATATTAGTTATCGATGAAGCGCATCACTGTTCTGGTAATCACCCCTACAACAAGATCATGAAAGACTTTTACGGACCAACAGCTGACAAGTACAAACCTTTGGTACTGGCGCTTACCGCATCCCCTGCTGGCGATTGTAGCTTTGAGAAAACATGGAGTCGTTTGATTGACTTGTTGTCCAGACTGTATGCGTCAGCCTGTATGCCTGTCAACTCAGGAGACCTAGAGCTGTTCGCTAATCGACCTGTCAGCGAATACCGGGTAATCCCTCTTACACCAAGCCAGCAAGAGTTGCAACAAGAAGTAGAAAAAGTGTTGTCAGTTATCGGGCCAATACTAGAATGCCAGGCGGGGTGCAAGGGAACCCTCTGCTGCTTCTCACCGGAACTACCTAACTACCGAGGTGCATTAAGGGACATTATCGGCAGGTGTCACGAGAAAGGGGACATCAAGGGTCATGCTCTTGGTGAACTTGTGACGCATCTTGTGGGAGTCTTGGAGTTGAATAGTATTCTGGGGATGGACCATGCTGTTGAGTGTCTTCAGGAATGTCTTCAGCTCATAGAAAACGCGTCAACACCGATGGAAAAAGAAAAGAAGTTGATGATCTGGTATGAATACTGGTTTAATTTATTTAGGAAAGCTGTCTCGCAGATCCGTTCCCCTTTGAGAGTACGTCCGTTTCAGTGCAAAGAAGACAAGTTTCAACATCTTGTGAGCGAATTAGAATTTTTTTCTGCTCAAACTCAGGATGATGGAACATCAAGAGGAATCATCTTTGTTAAGATGCGAAAGACCGCTCACAAAATCTGTGAACTCCTGCAAGCTATACCTTCCATCTCCAAGTCTCTAAATCCGAGCTCCTTTGTAGGACATGGTGGGGGAAGTGATGGGATGGAGTGGCACGGGGAGCAGGAAGAAATCCTGAAGAAATTTCGATCAGGTTGTATCAAGTTACTTGTGTCTACCAGCGTGCTAGAAGAAGGGCTGGATGTTCCTGTATGTAACTTGATTATCCGGTTTGACAGTCCCATGTCGTTGAGATCCCTGGTGCAGAGTCGTGGCAGAGCATCTCGCCGACCTGATAGCAGATTCATTGTGTTGTGCAGTGATTCCAAGGAGCAACAGGAAGCAATAAATCTCAAACAAAAAGAAGGCAATATGGACCAGGCAATGAGGCTGCTGTATTCCACCACGCTTCATCGTGTGAACCAGGCTATTCACTTCGCGTGTGATATGCGAAAACTCAGTCTTCGACCTGAAGAAGATGAAGTTGAAACTGTGAAAGATCTGTCTAGAATTGATGATCAAGATATGAAAACACTTCCTGATTTGTGTCCTAAAACAAGCGTTCCATCCTTGAAGGTCGCTGTGCATAATCTGGCATCGTCCACTGAAAAAAATGATGTCATTAGTTTTTTTGTCGACAACTTTGATGTGAAATCAATGGAACCAGTTGAATCCAAGAGAGACAATTGGTCAGTGGGTGGAAACCTAGCGAGGATGATACTGGAGCCAAACCAGCGTACTTTGCAGTTCGAACTTGATGCCACTCAGGATGAAGGAGCACATTCGGACGCCTACTTTGCCGATGTTGTTTTAAACAAGTGGTGCTCACGGGCAAATTCTGGTAATGGTAGCATCTCACAAGCTTGGATGGAGCGTTCAAATGGAAAACGGAAGCGAATAATTCCTGTCGACGTTTTAGCAGCAGAGTCATTTTCTGTGGGATATTTTCGCCACAGAACTGATTTCTGTAGTCATTGGCCTGAACCCAACGGGACTCTGTTGAGGAATATTCGTTTGCTTTTCGAGCACGACTTAAAAACACTGATGATCTTTTTTACGGTTGCTGAATTGGACGGAATAAGACTCTATGAAATCGAGGTCAGATACGGTGAACTGGAACATTTCATTCTTGTTGATCGGAAGAGACAGTTTGCGAATGTGTTCTTGTCTTTGAAACACCCACCACGGTTGTATAGCACGAATGAGGGGAGAGATTGGGAAGAGTTAGTTCTCAACGAGGAGAATCCAGATGAAGAAGATCTAGAAGAGCTAGAAGTGGACAGCCAAGATGAAATTGACATCGACTTTGGTGTAAGAAGTGACAATGATGAAGTAAACGATGATGTAGACGAAGAAGGGGACAGCCAGGATGAAATTGAGATCGACCACAAAGAAGAAAGCGACCAGAAGCCAGAGCTTGAGTACTCTCATCCTTTGTTGAAAGCCCTTGATAGCATGACAGGCTGGTCACGAGTTTCTCAAGTAGCAGACAGTCAAGACTCATTCGGTCAGTGCCATGTTTACATGCTTAACGTCCCAAACTCTGATATAACGTCCTGGGAGTTAGCGTTTGGAAGTCTTAGTCGATGGGGTAAAAGAGCGTTTTATGCCTCAGTAGCAGTGGTTCACATACCTCTGCACCAACGCTCCAGTGTGTACCTTCCGGCAAGTTTAAGTGATGACGTCAAATATGCTGTGCATTGTCTTGTCACTACTCACCCGTCAGTGCTTGGCCGTGTAACCAAACGTTTTGGTACTCTGCTCGAGCTCACAACTAAGCCTCCAAATGCTGTCTTGGCTGCATTGGAAAAGCTCAGCAAGATTTTTGACCACGATGTGTTCTGTGAACCGGAGCCAACCTTAGAGAGTCTTCTGTCACTTCCAAACCTAAGGTGTTCTCATATCAGTGGACAGCTTGTCCCTGAACATTGCGCGCTCGTCAAACGGCTCATCATCACGCCCACAAGTCTCATCTTCCGTTCTGCTGAGGTGATGCAGAAAAATCGGGTGCTGAGGAACTATCATTCGCTAAACTTTCTGTGCGTTAATATCCGAGATGAAGACTTCTCAAGGATCTCATCCTCCAGCAGCAACCTCGTGCCGGTGTTATCACACGTGAAGAGTATAATGGATGAAGGGATACACGTCTGCAATCAGCACTTTCTTTTTCTTGGATGCTCTAACAGTCAACTTCGTAGCCACAGCTGTTGGTTTGTCAGATCAACGTGCAACCCAGACGAGATTCGGAGGTGGATGGGTGACTTTACAGAAATCAAATGTGTGGCTAGCTATGTGTCTCGAATGGGGCAATGTTTCTCAACATCAATGGACACAATCGGTATCACTGTGGACGAAGGAGTTGTTTGGTCAGAGAAGGAGGACATTAAGTCTGAAGATCATGGCTACACCTTTTCTGACGGTATTGGCGGAATATCTGGAGAGCTTGCGCGAGAGGTTGTGAAGAAAATAGCCAAGAACTTCATTCCCTCCGCCTTCCAAATTCGTTTTGCTGGTTGCAAAGGCGTTTTGGCAATCGACACCAGACTCCCGGGGAAGCAGGCGTTCTTTCGTCAGAGCATGCACAAATTCGACTCATCGCATCGACGATTGGAGGTGCTCCAGACCTCTCGACCCCAGGCTGTTTTTCTTAACCACCAGGTCATCATGCTTCTGTCAAACCTTGGTGTTCCTGATGACGTGTTCATGACGCTAATGCGAAATGAACTGGATAACTTGGCAGGAACATTGTTGGACGAACGTCTCGCCTTTCAACAGATGGCGTCAGCTGCGAAGACAGGCATTGCTTACCGTGACTTGTCGGACGCTGGTCTCCCCCTGACAGTGGAGCCATTCTTCAGGTCTGTAGTGGCAACAGTATACAGAGACCGTCTGTATGGCCTCCTGACGAAGGCTAGGATACGGCTTCCACTGGGGGAGGCAAGACTAATGATGGGAGTAATGGATGAGACAGAAGTGCTGCAGTATGGACAGGTATTTGTACAATACTCGGCGGCCTCTACTGACCCCAACAGCCAAGATGAATTCAAGAAGAGTGACAAGAAAGTCCTGACGGGACCTGTGGTGGTCACAAGAAATCCCTGTCTACATCCGGGAGATATCAGGTTATTGATTGCTGTGGATAGGCCACAACTGAGGCACCTCGTGGACTGCGTGGTGTTTCCACAACTAGGATCCAGACCCCACCCGAGTGAGATGGCGGGTATGTGTAGTTTGTATTCATAG

Transcript

Acti_037285-T1

CAGACAACAACTATTTTCAATTTTATTTGTGGACTTATTTCGCCATTAATTCGGCTGAAATAGAGCCGTGTTGGTGTGCGGTGTCAGGGTTGTGACGTGATTGTTAAAGGCCGTCAGAATGGCCAGTTGTTCTCCACATTACGACATGGTTTTGAAATGCAAAAAGTGCGAGGCGTTACTTGCTGCCAAGGATGATCTAATTATCGGCACCGTCCCTCCATCCCAGTCCCATCTAGCGGTGAGGCCTGGGAGGGAAGAAAAAGTTTACAATAATGTAAGGAAAATTGAAAACTTGGAGGCAAATGTTAAGAAAACAGCAATGTGTCCGTTCAAACTACTTTGCAGCAACTGTGACTCGCCAGTGGGATCAGTTGGTCTGATAGAGGGGAGACCTGTATGTTGTTTTAAAGTCGAAGGGATTTTTTTCTGGTGTGGTTATGGTCATGAACGTATACAAGGAAAGAAGCTGAAGCAAATAATTCCAAAGCTGAAATGTGTTGGAATTTGTGAGTTTAACCTTCACCGCACGCAAGAACTTTTAAACACAGAACTCCTCGTCAGGAGGAGACAACAGTTACCTTTAGTATACTGTGATACGTCACAGCTAACAAACAACGACATTGGACAACTTACCCATGATGCACCACGTGATTATCAGCGCGAGTTGTTCCTGTCTGCCATGCGCAGTAATGCTCTTGTGTACCTGCCGACGGGTTCTGGTAAAACTCTGGTTGCGGCCATGGCAGTGAGATGTATGAAAACAATAAACCCCAACAAATTGGCGGTTTTTGTTGTTGACCGCATTCCCTTGGTTTATCAACAAAGTGAATACATGAAGAAACAACTCCCGAAACTAAACGTTAGGCTCTTAGCAGGGGATATGGGACAGGATCCTGGAAACGTGTCGCTGATGAAGGCAACGTTAGAAAAACTTGCTAGAAAACAAGTGGACGTGTTGGTTCTAACGCACCAAATCCTTCTCAACCACCTAGCAGATACTGACGGTCTACTGCGCATGTCAGACATGTGTATATTAGTTATCGATGAAGCGCATCACTGTTCTGGTAATCACCCCTACAACAAGATCATGAAAGACTTTTACGGACCAACAGCTGACAAGTACAAACCTTTGGTACTGGCGCTTACCGCATCCCCTGCTGGCGATTGTAGCTTTGAGAAAACATGGAGTCGTTTGATTGACTTGTTGTCCAGACTGTATGCGTCAGCCTGTATGCCTGTCAACTCAGGAGACCTAGAGCTGTTCGCTAATCGACCTGTCAGCGAATACCGGGTAATCCCTCTTACACCAAGCCAGCAAGAGTTGCAACAAGAAGTAGAAAAAGTGTTGTCAGTTATCGGGCCAATACTAGAATGCCAGGCGGGGTGCAAGGGAACCCTCTGCTGCTTCTCACCGGAACTACCTAACTACCGAGGTGCATTAAGGGACATTATCGGCAGGTGTCACGAGAAAGGGGACATCAAGGGTCATGCTCTTGGTGAACTTGTGACGCATCTTGTGGGAGTCTTGGAGTTGAATAGTATTCTGGGGATGGACCATGCTGTTGAGTGTCTTCAGGAATGTCTTCAGCTCATAGAAAACGCGTCAACACCGATGGAAAAAGAAAAGAAGTTGATGATCTGGTATGAATACTGGTTTAATTTATTTAGGAAAGCTGTCTCGCAGATCCGTTCCCCTTTGAGAGTACGTCCGTTTCAGTGCAAAGAAGACAAGTTTCAACATCTTGTGAGCGAATTAGAATTTTTTTCTGCTCAAACTCAGGATGATGGAACATCAAGAGGAATCATCTTTGTTAAGATGCGAAAGACCGCTCACAAAATCTGTGAACTCCTGCAAGCTATACCTTCCATCTCCAAGTCTCTAAATCCGAGCTCCTTTGTAGGACATGGTGGGGGAAGTGATGGGATGGAGTGGCACGGGGAGCAGGAAGAAATCCTGAAGAAATTTCGATCAGGTTGTATCAAGTTACTTGTGTCTACCAGCGTGCTAGAAGAAGGGCTGGATGTTCCTGTATGTAACTTGATTATCCGGTTTGACAGTCCCATGTCGTTGAGATCCCTGGTGCAGAGTCGTGGCAGAGCATCTCGCCGACCTGATAGCAGATTCATTGTGTTGTGCAGTGATTCCAAGGAGCAACAGGAAGCAATAAATCTCAAACAAAAAGAAGGCAATATGGACCAGGCAATGAGGCTGCTGTATTCCACCACGCTTCATCGTGTGAACCAGGCTATTCACTTCGCGTGTGATATGCGAAAACTCAGTCTTCGACCTGAAGAAGATGAAGTTGAAACTGTGAAAGATCTGTCTAGAATTGATGATCAAGATATGAAAACACTTCCTGATTTGTGTCCTAAAACAAGCGTTCCATCCTTGAAGGTCGCTGTGCATAATCTGGCATCGTCCACTGAAAAAAATGATGTCATTAGTTTTTTTGTCGACAACTTTGATGTGAAATCAATGGAACCAGTTGAATCCAAGAGAGACAATTGGTCAGTGGGTGGAAACCTAGCGAGGATGATACTGGAGCCAAACCAGCGTACTTTGCAGTTCGAACTTGATGCCACTCAGGATGAAGGAGCACATTCGGACGCCTACTTTGCCGATGTTGTTTTAAACAAGTGGTGCTCACGGGCAAATTCTGGTAATGGTAGCATCTCACAAGCTTGGATGGAGCGTTCAAATGGAAAACGGAAGCGAATAATTCCTGTCGACGTTTTAGCAGCAGAGTCATTTTCTGTGGGATATTTTCGCCACAGAACTGATTTCTGTAGTCATTGGCCTGAACCCAACGGGACTCTGTTGAGGAATATTCGTTTGCTTTTCGAGCACGACTTAAAAACACTGATGATCTTTTTTACGGTTGCTGAATTGGACGGAATAAGACTCTATGAAATCGAGGTCAGATACGGTGAACTGGAACATTTCATTCTTGTTGATCGGAAGAGACAGTTTGCGAATGTGTTCTTGTCTTTGAAACACCCACCACGGTTGTATAGCACGAATGAGGGGAGAGATTGGGAAGAGTTAGTTCTCAACGAGGAGAATCCAGATGAAGAAGATCTAGAAGAGCTAGAAGTGGACAGCCAAGATGAAATTGACATCGACTTTGGTGTAAGAAGTGACAATGATGAAGTAAACGATGATGTAGACGAAGAAGGGGACAGCCAGGATGAAATTGAGATCGACCACAAAGAAGAAAGCGACCAGAAGCCAGAGCTTGAGTACTCTCATCCTTTGTTGAAAGCCCTTGATAGCATGACAGGCTGGTCACGAGTTTCTCAAGTAGCAGACAGTCAAGACTCATTCGGTCAGTGCCATGTTTACATGCTTAACGTCCCAAACTCTGATATAACGTCCTGGGAGTTAGCGTTTGGAAGTCTTAGTCGATGGGGTAAAAGAGCGTTTTATGCCTCAGTAGCAGTGGTTCACATACCTCTGCACCAACGCTCCAGTGTGTACCTTCCGGCAAGTTTAAGTGATGACGTCAAATATGCTGTGCATTGTCTTGTCACTACTCACCCGTCAGTGCTTGGCCGTGTAACCAAACGTTTTGGTACTCTGCTCGAGCTCACAACTAAGCCTCCAAATGCTGTCTTGGCTGCATTGGAAAAGCTCAGCAAGATTTTTGACCACGATGTGTTCTGTGAACCGGAGCCAACCTTAGAGAGTCTTCTGTCACTTCCAAACCTAAGGTGTTCTCATATCAGTGGACAGCTTGTCCCTGAACATTGCGCGCTCGTCAAACGGCTCATCATCACGCCCACAAGTCTCATCTTCCGTTCTGCTGAGGTGATGCAGAAAAATCGGGTGCTGAGGAACTATCATTCGCTAAACTTTCTGTGCGTTAATATCCGAGATGAAGACTTCTCAAGGATCTCATCCTCCAGCAGCAACCTCGTGCCGGTGTTATCACACGTGAAGAGTATAATGGATGAAGGGATACACGTCTGCAATCAGCACTTTCTTTTTCTTGGATGCTCTAACAGTCAACTTCGTAGCCACAGCTGTTGGTTTGTCAGATCAACGTGCAACCCAGACGAGATTCGGAGGTGGATGGGTGACTTTACAGAAATCAAATGTGTGGCTAGCTATGTGTCTCGAATGGGGCAATGTTTCTCAACATCAATGGACACAATCGGTATCACTGTGGACGAAGGAGTTGTTTGGTCAGAGAAGGAGGACATTAAGTCTGAAGATCATGGCTACACCTTTTCTGACGGTATTGGCGGAATATCTGGAGAGCTTGCGCGAGAGGTTGTGAAGAAAATAGCCAAGAACTTCATTCCCTCCGCCTTCCAAATTCGTTTTGCTGGTTGCAAAGGCGTTTTGGCAATCGACACCAGACTCCCGGGGAAGCAGGCGTTCTTTCGTCAGAGCATGCACAAATTCGACTCATCGCATCGACGATTGGAGGTGCTCCAGACCTCTCGACCCCAGGCTGTTTTTCTTAACCACCAGGTCATCATGCTTCTGTCAAACCTTGGTGTTCCTGATGACGTGTTCATGACGCTAATGCGAAATGAACTGGATAACTTGGCAGGAACATTGTTGGACGAACGTCTCGCCTTTCAACAGATGGCGTCAGCTGCGAAGACAGGCATTGCTTACCGTGACTTGTCGGACGCTGGTCTCCCCCTGACAGTGGAGCCATTCTTCAGGTCTGTAGTGGCAACAGTATACAGAGACCGTCTGTATGGCCTCCTGACGAAGGCTAGGATACGGCTTCCACTGGGGGAGGCAAGACTAATGATGGGAGTAATGGATGAGACAGAAGTGCTGCAGTATGGACAGGTATTTGTACAATACTCGGCGGCCTCTACTGACCCCAACAGCCAAGATGAATTCAAGAAGAGTGACAAGAAAGTCCTGACGGGACCTGTGGTGGTCACAAGAAATCCCTGTCTACATCCGGGAGATATCAGGTTATTGATTGCTGTGGATAGGCCACAACTGAGGCACCTCGTGGACTGCGTGGTGTTTCCACAACTAGGATCCAGACCCCACCCGAGTGAGATGGCGGGTATGTGTAGTTTGTATTCATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04851	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF05183	RdRP	RNA dependent RNA polymerase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR006935	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR007855	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003968	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0030422	Biological Process	siRNA processing	Interproscan
GO:0031380	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-