Gene detail

Detailed information of Acti_037099-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_037099-T1	NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER	ScLC4GM_1636	45886875	45922002	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_037099-T1

ACTGATTTTAGTTTCCGACGAAGAAACTAAGAGTTCTTTGTGTTTTTATTATGAAGGTGTCCATTTTGAACACGGTTGATACCTCGCACGAGGATATGGTCCATGATGCTCAGATGGACTACTATGGAAAGAAGCTGGCTACATGCTCGTCTGACAAAACTGTCAAAATCTTTGAGACAAGTGAATCCCAACAAACTTTAATTGTAACTTTAAGGGGGCATGAAGGTCCTGTGTGGCAGGTCAGCTGGTCCCATCCTATGTTTGGCAATCTTCTAGCATCTTGTTCCTATGACCGAAAAGTCATCATGTGGAAGGAATCTAGCAGTGGATGGAATAAGTTGCAGGAGTTTTGTAATCATGACTCATCTGTCAATTCGATCTGCTGGGCACCCCATGAGTATGGTCTAGTGTTGGCATGTGGTGCATCGGATGGGTCTGTATCAATTATTTCCAGTCCAGGTGATGGAACATGGGAGACCAAGAAAATCAACAATGCCCACACAATTGGTTGTAATGCTGTGAGCTGGGCTCCTGCTGTGGCACCAGGGTCTATCTTAGAGCATCCTGCATCAAAGTCTGTTAATCTTGAGAAGAAATTTGTAACTGGTGGTTGTGACAACCTGGTCAAAATATGGAGGGAAGTTGAGGGACAGTGGATAGAAGACCAAAAACTAGAAGCTCACAGTGACTGGGTGCGTGATGTCGCATGGGCACCAAATATAGGACTACCAACTTCTACTATTGCAAGTTGTTCTCAGGACTGTCGCGTGATAATTTGGACAAGAAATGAGGATGAAGGAGAAGGCTGGTCATCAAAAGTTTTGAAGAAATTCAGTGATGTTGTCTGGCATGTCAGCTGGTCTATAACTGGAAATATTTTAGCAGTTTCTGGAGGTGACAACAAGGTGAGCTTATGGAAGGAATCTCTGGAAGGACAGTGGGTGTGTGTTAGTGATGTGGATAAAGGACAAGGACAAGAACCTACATGTATAGAGTAGAACTACACATCAAGGCTTTAGTGACGTGTTAATGAGCAGACCCTGGTCATTAGCATAAAGATTAATATTATGGGCCTCATCAAATTCAAAGGCATGGCATGTTTATTATGGTAACACTTGGAATCACATGGCAGTGTCATTGAACTTACTGAACATACATTGCTCGGAGATGAGAATTTTTTATGGTTTAGGTTTAATGCCATTTTCGTTGAAGTGCGACTGCAGACGTATCAGGTCGCGTTTGGAAAATTGCATTTAGTCAAACATCAATTAATTATAGGCGGTATCTAGTCTCATACAAAGACCTTCAAACGGCAATTTTCCCAAACCTGACTTGAAACTTTCAGTCGCATTTCAACGAAAATGGTAATAAAAGTTGAATTCCTGAATACTGGTGTAGATCCTAAAGTGTCATTCATATACATCTATTTCAAAAAAATCCTATCAAATGCAATGGATACATTTATTTCTAAGTTTATGTATACAAACTTCGCTGTGCAGTCTTTAATCAGTTTTGTAAAAATACACCACATGTACCTCTACGAAAATACCGGTATACGGTGATTTGAGGAACTTGTAAATCTACGATCTAGGGTTCTCAGACAAAGTTGTCACGTTTTTTTATGCGATCCGATTGCGAGTACCCTCAGTAAATGTTAATGAATAAACATTTATAAGCTTAGCGTTTAAAATATCATGTTTTCCCGTAAAAGTTATTGTTAATGAGCAAACGAATTAGTAGAAATTGAAACAAGAGGCGACGCGGTTACAAGAATAGGTTTAAATGCCATTTATAAATGAAGGGAATTGTTTGGCAAAACAGGCGGCTACTTCTAACCTGACAGCCGGCGGAAATCTGTCAGTTGCCGGCTTCTACTGGCCTGCTATGCAGATGTACGAGTAAAAAAATACGTCTGCACAGGAGGCTATGCTTCTCTCAGTTCCAGTTACTCTACCAATCCAGATGTCATTCTCGGAAATGCTAAATTTTGAAGTGAGACTCTTGAATGCTCCTACCCTTTGTCGAGTAGTATATGTGGAGTCAAAATGATACCCGTTTTTGGGAATTTTTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR037363	Family	Sec13/Seh1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11024	NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005198	Molecular Function	structural molecule activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0030127	Cellular Component	COPII vesicle coat	Interproscan
GO:0031080	Cellular Component	nuclear pore outer ring	Interproscan
GO:0032008	Biological Process	positive regulation of TOR signaling	Interproscan
GO:0032527	Biological Process	protein exit from endoplasmic reticulum	Interproscan
GO:0090114	Biological Process	COPII-coated vesicle budding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-