Gene detail

Detailed information of Acti_036545-T2 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_036545-T2	CYTOKINE RECEPTOR	ScLC4GM_1636	28580155	28626274	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_036545-T2

ATGCAATCAACAATTGACCAGAGTTCAGATTCAACAGCAACAACCGCTGAAGAAAATGTAACTACGCAATCAACAACAGACCAAAGTTCAGTACACGGTGAATGGACGGAGTGGGAGTCTTGGCAAAGCTGTAACAGGCCTTGTGGGTCTGGATTCCAGAACAGAACGAGGCAATGCACGAACCCAGAACCACTGTATGGAGGTAATGGCTGTGAAGGAGAAGAAATGGAGGCCAGAGCTTGTAACAGAAGCATGTGCCCAGGTCGATTCATTATACCAAGAGGATCCAAGTGTTTTGAGTGTTGTAGTTTACGAAATAAGCTCCTCAAGGTACAGGAGGAGATAGCAGCCGGTAAACTACATAATATGCCATCACAACTACTGAATATTACAGTTTATACAGTTCCAAATGCTGCGCCTAGAATCATTTATGCACGTAACTCAAGTTCCACGAGCTTAAGAATCAAGTGGTCTCCGGTAACAGGAGATGTATTGAACGGGTCACCACTCACTGGATATGTGGTATTCTATAAGGAGAAACATGGCAAGTATACTCCTAATGTGCAATACAGCGTCCCTGAGTCTGTCATGGAGGTACAGATTTTGGGATTGAAGAAATGGACGTCATATACCCTACGAGTTCTGGCACGTACGCTCAAAGGGAATGGAGTGGCCAGTGAACCGATTCATGTGTTAACTGACGAGGATGTTCCCAGTCGGTCGCCGGAAGATGTCAACGTAGACTCCCCAAATTCTACAACCATATCTCTGTCATGGACACGAATACCATCCAAGCATATCTATGGAAAACTGCTTGGGTATAAAGTCTTCTTCAAGCCAAAGGATGACACAGTGTTTAGATTTCTCACCGTGGGACCTCATCATACTTCAGCTCAGTTAACTGGACTACAGAAATTTCACCCATATGTAGTTTCAGTTTGTGGATTAACATCTAAAGGATGTGGAGCAAACAGTAGAAATACCTTGATTTATACTTTAGGCGATGTTCCTTCAATGCCTCCACAACGCCTAAAAGTGAAAAACCTGACGGCAGCTACTTACTTAGAGGTGACTTGGGGTCCAGTTCCTAGCGGCCACGTCAACGGAATTTTAACGGGATACACCATAAAGTACCTCCTAGTTCACAGGATGGGTGATAAAGTGGAAGACCAGGTTGAAGAAGAACACACGTTTGGACCAAATACATTCTCAGTGAGGCTCAAGGGGATCTATGGAGATGCTGTCTATATGCTGAGGATAACTGCATCAACTCGGAAAGGAATTGGTCCGTTCAGTGACGTCATTATTGGAGAGACTTGCCACTGCCCAAACGTTCTGTATACAAATTATTGGCTCCAACCGCCATACAGTAAAATGAACCCCGACAGCTCAATGGGAGGAATAATTCCCAGCATCGTTGTGGACATGATCGAATGGGCATGCGGAGAGTGTGCAAATGGTCACGTCAAAACTACTGTAAACATGAAGTCAAATGGACACGGTGGCCAAGCACTAAAATCTGGAGCTGTTCAAGTCCAACAAGATATCGGTGCCGTCCCTCAGATAAGTTTCCCAGTTTATGGGAATAAGTACATCACGAAGTATATGGGTACGTACGTGTATATTCACCTTGTGACCTCCCCTGGCATTGCTTTTGTCACTGTTACTGGGCCTCCAGGATCTTCATCTATGACGATTTTACATTCTGTGATTGCCTGTTTTCCGTTTCTTCTTACAATCCTCTGCATGGCCATTCTGGCAGGATTCATTATTTGGCTCATCGAGACGAGACAAAATCAGGACCAGTTTTCTCCAAGTTTTTTTAAAGGCGTTGGTGATGGATTCTGGTGGGCTTTCGTTTCCATGACGACAGTAGGATACGGTGATCGCACACCTACTACCTTCGCTGGCCGATTATTTTCAATCATGTGGATTTTGACTGGTCCTGTCCTGATATCCATTCTTGTTGGTGCAGTTAGTTCATCCCTGACGACAGTTACTATGGACACGAACATCAAGCTGTATGGCACCAAGATTGCTGCTATTGAAAATTCAACTGAACATCGTGTAGGAGTTCTAAGGAACGCCAAAGTCAACACAGAACACAAGTATAATAATCTCAATGAAATTCGCGACGGCCTTGAGCAAAGAGAAGTTAAGGGTGCACTAATCGACACCTACGTCGCTGCGTACAACAAAGCATATTTGTTTAACGAGGACATCAGTGTTAATAGATTGTTGGTGAGGCCGTTTGGCTACGGTGTCGTGCTGTCTGGTATCGCTGTTAGTACACAGAGGAGATGCAAAGAATATATAGACAGGAATATTAGGGAGATCTACGCACTGATTGAAAACAGCACAGAAACGCTTCAGGCACCACGCGTTATAGCGGCGGCGAAGAAGAGCACTGGTTTGCTTGATATTGGTTCTCAGTTGATGACCTCTTGCCTTCAGTATTGCGGAGCTGCTCTCGCTACAGCAATAATAGCAGGCCTCTTGTGGCACTACGCGGTGTATTTACCGCTTGAAAGAAAAGTTGAAATAAAAGTGATCGAGTGGAAGCATTCCAAGCCTTCTGCAAAATATGAGGACCTTCGTAAAGGAATGAAGTCAGTTCTTGAGGACTTCAAAGAAAGGTTTTCAGTCATTGACGAGAGAAAAAGTATACTTCAAATAAAGAGAGAGAATGGCAACATTGATGCCCATATGACATAG

Transcript

Acti_036545-T2

AGATTCAGCATCGACAGCGGAAAGTGTAACCATGCAATCAACAATTGACCAGAGTTCAGATTCAACAGCAACAACCGCTGAAGAAAATGTAACTACGCAATCAACAACAGACCAAAGTTCAGTACACGGTGAATGGACGGAGTGGGAGTCTTGGCAAAGCTGTAACAGGCCTTGTGGGTCTGGATTCCAGAACAGAACGAGGCAATGCACGAACCCAGAACCACTGTATGGAGGTAATGGCTGTGAAGGAGAAGAAATGGAGGCCAGAGCTTGTAACAGAAGCATGTGCCCAGGTCGATTCATTATACCAAGAGGATCCAAGTGTTTTGAGTGTTGTAGTTTACGAAATAAGCTCCTCAAGGTACAGGAGGAGATAGCAGCCGGTAAACTACATAATATGCCATCACAACTACTGAATATTACAGTTTATACAGTTCCAAATGCTGCGCCTAGAATCATTTATGCACGTAACTCAAGTTCCACGAGCTTAAGAATCAAGTGGTCTCCGGTAACAGGAGATGTATTGAACGGGTCACCACTCACTGGATATGTGGTATTCTATAAGGAGAAACATGGCAAGTATACTCCTAATGTGCAATACAGCGTCCCTGAGTCTGTCATGGAGGTACAGATTTTGGGATTGAAGAAATGGACGTCATATACCCTACGAGTTCTGGCACGTACGCTCAAAGGGAATGGAGTGGCCAGTGAACCGATTCATGTGTTAACTGACGAGGATGTTCCCAGTCGGTCGCCGGAAGATGTCAACGTAGACTCCCCAAATTCTACAACCATATCTCTGTCATGGACACGAATACCATCCAAGCATATCTATGGAAAACTGCTTGGGTATAAAGTCTTCTTCAAGCCAAAGGATGACACAGTGTTTAGATTTCTCACCGTGGGACCTCATCATACTTCAGCTCAGTTAACTGGACTACAGAAATTTCACCCATATGTAGTTTCAGTTTGTGGATTAACATCTAAAGGATGTGGAGCAAACAGTAGAAATACCTTGATTTATACTTTAGGCGATGTTCCTTCAATGCCTCCACAACGCCTAAAAGTGAAAAACCTGACGGCAGCTACTTACTTAGAGGTGACTTGGGGTCCAGTTCCTAGCGGCCACGTCAACGGAATTTTAACGGGATACACCATAAAGTACCTCCTAGTTCACAGGATGGGTGATAAAGTGGAAGACCAGGTTGAAGAAGAACACACGTTTGGACCAAATACATTCTCAGTGAGGCTCAAGGGGATCTATGGAGATGCTGTCTATATGCTGAGGATAACTGCATCAACTCGGAAAGGAATTGGTCCGTTCAGTGACGTCATTATTGGAGAGACTTGCCACTGCCCAAACGTTCTGTATACAAATTATTGGCTCCAACCGCCATACAGTAAAATGAACCCCGACAGCTCAATGGGAGGAATAATTCCCAGCATCGTTGTGGACATGATCGAATGGGCATGCGGAGAGTGTGCAAATGGTCACGTCAAAACTACTGTAAACATGAAGTCAAATGGACACGGTGGCCAAGCACTAAAATCTGGAGCTGTTCAAGTCCAACAAGATATCGGTGCCGTCCCTCAGATAAGTTTCCCAGTTTATGGGAATAAGTACATCACGAAGTATATGGGTACGTACGTGTATATTCACCTTGTGACCTCCCCTGGCATTGCTTTTGTCACTGTTACTGGGCCTCCAGGATCTTCATCTATGACGATTTTACATTCTGTGATTGCCTGTTTTCCGTTTCTTCTTACAATCCTCTGCATGGCCATTCTGGCAGGATTCATTATTTGGCTCATCGAGACGAGACAAAATCAGGACCAGTTTTCTCCAAGTTTTTTTAAAGGCGTTGGTGATGGATTCTGGTGGGCTTTCGTTTCCATGACGACAGTAGGATACGGTGATCGCACACCTACTACCTTCGCTGGCCGATTATTTTCAATCATGTGGATTTTGACTGGTCCTGTCCTGATATCCATTCTTGTTGGTGCAGTTAGTTCATCCCTGACGACAGTTACTATGGACACGAACATCAAGCTGTATGGCACCAAGATTGCTGCTATTGAAAATTCAACTGAACATCGTGTAGGAGTTCTAAGGAACGCCAAAGTCAACACAGAACACAAGTATAATAATCTCAATGAAATTCGCGACGGCCTTGAGCAAAGAGAAGTTAAGGGTGCACTAATCGACACCTACGTCGCTGCGTACAACAAAGCATATTTGTTTAACGAGGACATCAGTGTTAATAGATTGTTGGTGAGGCCGTTTGGCTACGGTGTCGTGCTGTCTGGTATCGCTGTTAGTACACAGAGGAGATGCAAAGAATATATAGACAGGAATATTAGGGAGATCTACGCACTGATTGAAAACAGCACAGAAACGCTTCAGGCACCACGCGTTATAGCGGCGGCGAAGAAGAGCACTGGTTTGCTTGATATTGGTTCTCAGTTGATGACCTCTTGCCTTCAGTATTGCGGAGCTGCTCTCGCTACAGCAATAATAGCAGGCCTCTTGTGGCACTACGCGGTGTATTTACCGCTTGAAAGAAAAGTTGAAATAAAAGTGATCGAGTGGAAGCATTCCAAGCCTTCTGCAAAATATGAGGACCTTCGTAAAGGAATGAAGTCAGTTCTTGAGGACTTCAAAGAAAGGTTTTCAGTCATTGACGAGAGAAAAAGTATACTTCAAATAAAGAGAGAGAATGGCAACATTGATGCCCATATGACATAGCTGCAGGATGTTGTCTGTTCATTTTAAAACTACTTGTTGTAATTAAAATTGTCTGCTTTGAAAACACAACGATCTCGCTACCGACGGCGACTTCCACTGAAATGGTTGACTGGCATAGACTAACGGTTGAGATTTGTTATAATTTTGCTGAATACAATTTTTTTCGTTCCAGAATCCTCTAAATATTTTTGTTCTGATTGGATGGTAACCGATCCTATTTTATTCTCATCCCAAAGTTCTTTCTTCAAAACCACTGCTTTTGACAAGATTCTGGCATAAATGTATGCTTGCATTAACACCTAGACCTTGTATTTCTCAGTGCTACATATTTGATAATAAAAGCCTGGAAAACGGGATAAACCTGCTGAACATTTCCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF07885	Ion_trans_2	Ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013099	Domain	Potassium channel domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR050379	Family	Type I Cytokine Receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23036	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004896	Molecular Function	cytokine receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0019221	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0019955	Molecular Function	cytokine binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-