Gene detail

Detailed information of Acti_036021-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_036021-T1	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	ScLC4GM_1636	12967426	13041851	-

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_036021-T1

ATGGCAGACCGGAAAGGCCGGAAGGGAATCAGTCCCCTGTCAACAGCGGCGAGATGCCCTGATGGACTGGATAATTCGAGATCACCTAAACCAGGAAAACTGAAAAGAAGATCAGGCTCTAGATCTGCCAGCAGAGACAAAAGTTCTGTGCATCAAGATTTCTTCAACTTGCTAGCAGATGAGTTAATAGAAAATATTTTATGCCAGCTGCCGATACTGGACCTGCTGCGACACTGCACTATAGTGTGTCGACGATGGAATGCAATAATCAGCAGTCCAAAGTTCATCCCATGGAAAAAGAAATATGCTTTGCTCTCATCTGGATGTGAAGATACCCAAGACCAGTTGAACAGGCTTTTAATCCAGCATGACCTGCTTGACCATCCACAACAGCTGGCCTCCAATCTGGGTCTGATGTTTCAAAAATTCCGTAGGGGTAACGTGCATCTCCTAGAGGGACTGCAACAGCATTCAAAGTTTGTCCTTGTGAAGGACTTCATTACTTCTGGTCATCTTACAAAAACTAATGAGGATTCCAGTTCTGATGAGTCTGACTCAGAAGTGATTACAAGCCAACCTGTGCCAACAAAAAACCCAAAGCAATCCAAAGAATCTGCTAAGAAAGTCAAAAAAGCTGAGCCTTCATCTTCAGATTCAGACAGCGGCAGTGAAGATGAGAAACTTCCAGCTAAGAAAGTGAAACCTCAAGCTAAGAAAGTGAAACCTCCAGCTAAGAAAGTGAAACCTCCTGCTAAGAAAGCAAAGCCAACTCGGGTTCAAAATAAGAGAGTTAAACAGAATGGCAAAGCATCCAAAAAGGCGAAGTCTAGCAGCAGTGAATCAGATTGTGAGCCTTCAGATTCAGACAGCAACAGTGCAGATGAGAAACATCCAGCTAAGAAAGTAAAGCCAACTCAAGTAAAAAATAAGAGAGTTAAACAGAATGGCAAAGCATTTAAAAAGACAGAGTCTATCAGCAGTGAATCAGATTGTGAGCCTTCGCCTTCAGATTCAGATAGTGACAGTGAAGATGTGAAATCTCCAGCTAAGAAAGTAAAGCCAATTCAGTGTGAAAATAAGAGCGTTAAACAGAATCGCAAAGCATCCAAAACAGCAGAGTGTAGCAGCAATGAATCAGATCGTGAGCATTCGCCTTCTGTTTCAGACAGCGACAGTGAAGATGAGAAATCTCCAGCTAAGAAAGTTAAGCCAACTCAAGCAGTGTCTAGCAGCAGTGAATCAGATTGTGAGCCTTCAGATTCAGACAACGATGCAAATAAACCTGTAGCTAAAAAGACAGCAAAGAAGCGTGAGCCAGTTAAACGGAAAGTAACAGCCAAAAATGAGAATTCCAGTGACGATTCCTCTCGTGAGGAATCAGCTGTAAAGAAAGGATATAAGAAGCCTGAGAAAAAGGCTTCTAAAGAGTCACCATCAGAATCAAGCTCAGATGGATCTTCTGATGAAGAGTCCAAAGCAAAAAAAGCTCCAGTTGTAGGAAAAGCCTCCAAGAAAGAAAACGAAGAATCCTCTGGTGATTCCAGTTCTGAGGAATCTTCATCAGATGACGAGAATGAGAAAAATACTGCTACCAAACAAGTAAAGAAAGCTGGTGTGAAAAGAAAGCAGTCTGAGTCGTCTTCAGGGGAATCTGATTCTGATGATGAAGAACCCGCAGAGAAAAAAAGTAAAAAACAAAAAGAGATAGTCAGTCCATGGGCTGTAGTGGCCCTGCTTGCACTAGTGTCTTCTAGTGTAAGAGATGTAAGTGAGATCATTTCTAGGATGCTTGGGCCTTTTACTAATTGCCTCGTTGTAGAGGTAATAGAATGCCTGTATGCTCTTGCTTGTCTCTTTAGGGAGCTAAAAAAGCAGAACAGGATTGTATCAGGCTTACATTACAGAGTATTCTATGCCCTCTATCTCTATGAGAATGAGTTCTCCGCCACAGCTAGTTTAGCAGGAAGCTCGAGTGGTCACCGGTCCCGCATGCGACACCGGCGTTCTTCTCACTCGGTACGTCTAACACATGAACAGGTGCAGATAGTAAAGCACGACATTAAACCCCAAGAAGTCATCAAGATCGTTGCATTTGCGGGCACTGGAAAGACAACTACGTTAGTGAAATACACCAAACTAAGACCAGCCATGCGCTTCCTGAACGTGGCTTATAACAAGTCGATTCAACTCCAGGCCGAGAAGGTGTTCCCCGACAATGTCGAATCTCGCACCATCCATTCTTTAGCCTATCATGCAGTCGGCAGGAGGTATATCGCGAAATTGGCGGGCTCGATCAAAATCAGTATCGTAACCGATGCACTGCCTGATAATAGGGGGGGATTCTTACACTCCAGACGTGTGGTCGACACTCTGACATGCTTCATCGCGTCGGCGAGAAAATCAGTTACCATTACTGACGTCCCTCCGCGACGCCCGTCCCTGGGAGAGGCATTTAACCCAAACAGTAGCTTCTACGACTCTGAACATTATCTACAGACAGTAGCGCGAGATGCTGCGATGATATGGGAGAGGATGTGTAACGAGAGAGACACTGGCATGCGCATTACACACGATGGATATCTTAAACTTTACCAGCTCAGTAACCCGGTGATTGAAGGCTATGATTGTCTTCTAATTGACGAAGCTCAGGACTGCACGCCAGCGGCGAGTGATATTCTGTTGCGTCAGCCTTACGCGAAGATTCTGGTGGGAGACCCTTACCAGCAAATCTACGGATTCCGAGGCGCTAAGAACGCCATGGAGAATGTGCATAGTACGCGAACGTTCTACTTAACACAGTCTTTTCGCTTTGGACCAGAGATCGCCTATGTGGCTAACTGTATACTGGAGTCGCTAATGGGAGTCCATGGAAAGACACTTGTCGGGGGATCGAAGGAAGGTGGCGTGTTTGGTGACCAGGTTGGGCAGCTAGCGATCATTTGTCGAACGAACTTTACGTTGTTCAATGAAGCATCCCAGATCTGTAGACAGAAAAAGAAGATTAAAGTTGGTTTTGCTGGGGGTTTACCGTCCTACAATCTAGAGAAGGTTCATGATATTTATAAACTCTATTCAGCTGGCGCTACTGGAAAAACTCTCGCAATCAATGATCCATTCATCAGGAGGTTCAAGTCGTTCAGTGCGTTGAGACTGTACGCCAGGAATGCCCCTGACCCGGAACTGTTGGGCAAAATTAAGATCGTTGAGACCCACACCGTTATGGTCCCAACCTGCATAGCCGCAATCGAGAGTAGGGCCTGTTCTGCTATGGAACAAGCTGGTATGTAG

Transcript

Acti_036021-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00646	F-box	F-box domain	Domain	Interproscan
PF13245	AAA_19	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000212	Family	DNA helicase, UvrD/REP type	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11070	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0000725	Biological Process	recombinational repair	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-