Gene detail

Detailed information of Acti_033972-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_033972-T1	ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32	ScLC4GM_1591	104688646	104714504	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_033972-T1

CAATGCCAAAATGGAGGATGAGACTGGCGTTTTAGGTAAACGAATAATCTATGAAGGATTTTATGGAACTGTTAGATATTATGGCCAAGTTCCATCTACTACTGGGGAGTGGTACGGAATGGAATGGGATGACGAAACTCGGGGTAAACATGATGGTACTATTGACGGAGTAAAGTACTTTGAGTGCAGCCATCCAATGAGTGGATCATTTGTGAGGCCAAGGAAGATAAACTTTGGAATCACTGTGATTGAAGCTTTGCAGCAGAAATATGGCAAGTCAGAATTAACTGACCAGGATATGTATGTAGTGGGAACGAAGAACCAAATGACTGCTGTGGAAATGGTGGGAGCAGAATCAGTTCAAGAACAACAAAGTTGTTTTGATAGAGTACAAGAGGTTGTCCTCAGGGATCTAGCTGTCAGAGGTCCAGATAAAGACACAAAGCTCCATGAACTAGCACCAAATATTAAAGAGTTGGACCTTGCAAGAAATCTTCTATGCAAATGGGAAGACGTTGCTGACATTACGAAAGAAATGAAGAATTTAAACACTCTGATTGTCAGTGAGAATATTCTGAAGTTGCATCCAGAGCCCAGTGTGCTTGCTTCTTCATTCAGCACAGTGACAGAATTATACTTGAACAAGATGAACCTAACATGGTCTCAGGTAGAGTTAATCATCACAATGTTTCCTCATCTAGAAGTTCTACATCTTCGGCATAATAAAATTACGAATTTGAGGAGTATGGAGGGCCAATCAGGAAGGGTACAGCAATCAAGATTTGAGAATATTAAAATGTTAAACCTCGACGGCAACCAGCTGTCTGACTGGAATGAAATTCTCAGTCTTAGTTCATTGCCACAGTTGAATTCACTTATTTTGAATGGAAATCAGATAACTGAAATCCACTTTGGTGAAAATTCTGGTGGCTGCAACACGACAGCTGTTTTTGTGTCTCTTCAGTCCCTCTCCCTTAGTAAGAATAACATCAAAGATATTTCCAGTATAAATGCGCTGAACTATTTACCGTCGTTGGTTCAGCTACGATTCAAAGACAATCCTCTGTTTAAAGGTGAAACAAGTTTTACCAGTCGCCAAGAACTCATCGCTCGTGTTGCGACCTTAAAGACAGTTAATAGCAGTCATGTGACAGAGAAAGAGAGACAGGCGGCCGAGCGTGCATACATCAAGAAGTACGCCAAAGACTGGGTCAATGGAGGTGGTAGAACTAGTGAGAGTGACTTCACCAAACTCAAACCAGAATTCGTAGAGAAGCATCCTCGTTATACAGAACTTATTAAAGCCCATGGGCCTCCCGAGGAAGAGTCACTCAATAAAGGATCACGAACATTAAAGGACTCGTTAATAACTGTTACCATTAAATGCCCTGATGCCCCGGACAAGAAGAATGTGTCCAAAAAATTACCAGGTACGATGACAATAGGCAAGTTTAAGGGACTGCTGTACCGACTGTACAAGGTTGACAGCGCTGATCAGAGATTATCTTACCTCGATACAAAGAATGACCGGGAGATTCAACTTGACGATGACTTGAGACAGCTGAACTTTTATTCCGTCGTTTCTGGTGACACGGTCTATCTACGCTGGTAGCGGAATATATATATATATGTCAACTAAATAAACGAGACTGCAAGGAAATGGATGAAATCAATGGTTTACCTCCGTTGTTGCTATCCTGACTCGTTACAAACGTGCCGCTTGCTGTAAAGTAAAAGCTTATGGATATGATGCTCAGTCAAATTAAATTATGAACGTAACTATATGGTCCTTTGGATAGCGCTTGTATTAATGAGCAATCAATTCCAACTTGCATGGGAAAGGCCTATTGAGTTAAGGTATGCCAACCGACGTGGAAAGGCCGAGTAGCAGCTGACGTTTCGAGCGTTAACCCAGTCGTCTTTCGCACTGACAGTATACTGACGAAGGGTTAACGCTCATAACCTCAGCAGCTATCGGTTGGGCTTTCCACGTCGGTTAGCATAACTCAATCAACTTTAAGCTGATTATAGCAGTGTTTATCTTCCCCGCCGACGCCCGCGGGTTTACAGGAACTAGTTATCCATTGTAGTTTTTACAGGAATTAGTAAGTTACCAATAATGCCGTTGTAATCTTATTATCTTTATAGTCTTAATGGAACCGAGAAGTGCGTGGGTCTAGGAAAATGCCAAAAAAGTCTGCGAGGAATCCATGTTCCTCCAGAAAGCAAAATACAAGTCACATTTTTAATGAGTTTTCTTTGAAATATTATTTATTTTAAGGACAAGGTTTCAGAAGCTACCTAGTTGGCTTTGGAAACACTTTTGATAGGATGTGTTCCTGTTACTCGATTACATTATAATCACGTGACTTTGTACGAACAGGGAGAACCAATAAACGATTGAGCCATTGTTGTGAATCAGCCATTCTAAATAAACGAGGGCAAATGACGCATTAAAAAGTTGAAAAATCATTTTTACCGAAATGTCTTATACTATTATCCTAGTTATCCTACATTGTGTGTCTTCATTATCGCGAAATGTGGCATCAAATACTTCAGCCATTACAAACTTATGAACTAAGGCCTCTGTCCACGAGGGTCGTAGTGTCCCGTAGTGTCCCGTAGTGTCCCGTAAAAGCCACAGTTGGCATAGTTCCCGTAGTTGGCGGTGTTGTTGCCGCAGTTGGCGTATTTCCCATAGTTGGCGTAATAGCCGTAGTTCTCCCATTTTCCTCCCACCACAAAAACCAACACGCTAAATTCCAATTCGATCTGTGGTAATATTAGCCGGGTCCTGACTGTGGTTGTTTCAGGTCTTGTTAAAAATTCAGAGTACCCGTAGTCGGGGTGATCCCCGTAGTTGGCGTGGTGCCCGTAGTTGGCATCATAATAAAATAAATTAATGAGTATTATAGCCGATTAACAGTTCACATTACAAAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01302	CAP_GLY	CAP-Gly domain	Domain	Interproscan
PF14560	Ubiquitin_2	Ubiquitin-like domain	Domain	Interproscan
PF14580	LRR_9	Leucine-rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR000938	Domain	CAP Gly-rich domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036859	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR044079	Domain	TBCE, ubiquitin-like (Ubl) domain	Interproscan
IPR045081	Family	Acidic leucine-rich nuclear phosphoprotein 32	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11375	ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-