Gene detail

Detailed information of Acti_030387-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_030387-T1	KINETOCHORE-ASSOCIATED PROTEIN 1	ScLC4GM_1591	1020135	1039304	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_030387-T1

ATGGGAGGTTTCCCCTCACGGAAGGTGTTCTCTCATGGGAGGTGTTCCCTTGCAGGTGGTGTTCTCTTACTGGAGGTGTTTCCTCACGAGAGGTGTTTCCTCATGGGTGGTGTCCCCTCACGGGAGGTTTTACCTTACGGGAGGTTTTACCTTACGGGAGGTTTTACCTTACGGGAGGTGTTCCCTTGCGAGATGTGCTTCCTCGCGGGTGGTGTTTCCTCACGGGTGGTGTTTCCTTACGGGAGGTGTTCCCTCACGGAAGGTGTTCTCTCATGGGAGGTGTTCTCTTGCAGGCGGTGTTCTCTTACTAGAGGTGTTTCCTCATGGGAGGTGTCCCCTCACGGGAGGTTTTACCTTACGGGAGGTTTTACCTTATGGGAGGTGTCCCCTCACGGGAGGTGTTCCCTTGCGAGAGGTGCTTCCTCACGGGTGGTGTTTCCTTACGGGTGGTGTGCCCTGATGGGAGGTGTGCCCTTGTGGGAGTTGTCCTTTAGTGGAGATGAAACAAGCGAGAATGATGAGGACGCGATGAATTTAAAGAGAGTCATCTACCTTCTACAGTACACACCTCTGGATGATGGTGTCATGTTTCTTCTTAACTATGCTTATAAGCAAATATCATCAACCAACATTACCAGCCTGTGTAGACTGCGAGCTCTTCGTGCGCTCTTTGCCATCGCCCAGGATGACGCCATTGCAGAGGTGTGCAAAAAGCCTATTGACTCCATCAGGCAGTACATGCAGTCACTGGTATACCTAGCAGAACTGGAAGCACTTCACATACAACAGTCTCTCAGTGCCTTCCAGAAGTGTAATAAAGAGGGACTTGTGAGAGGTCTATGGCGTAATCACAACCACGAGAAAAGGGCGGTGCGTCTGGTTGCTGAATTATGTCTGGAGAATAGCATCCACGATCCACAACTATGGAACAGTGTACTACAGCAACTACTCAGCTTTGGAATGATCAAATATCTTCGTCGAGTGCTTGTTAGGCTGGCTGGAGTCCCTGATTTGTGGCAGGTGTCATGTCTGCCTCACATCTGGAGGAGTGTGTTATTGGCTCCATTCAAGCCTGTTTCCCCGCCATTGTCTGAGGAGGAGCTAAACTCTTGCCAAGAATCGGCAGCATTGCTTCAAAGATGCCCGCTACTGCTAGACCTGGACATAGCAGCTATTGCGGCTCAATTCCATCGCGTCGGGTTACAAGCCCACGCCTTATCGTGCCTCATGCTTGTACCATCCAGTACAGTACGACAGCAACACATCAAGGTTTTGTTGGATACAAAATGCGTTGTTGAGATCCTTGACCAGCTGCAACAGCAACGAGAGCATGCGCAGACGCTATTGCATGCTGACATGGTTGAAAGAGAGGTGTTTACATACATCGAGACAACAAATCAGCACGAGTTGTTACTTGGTTCTGCCCACTTTGATAAACTGGTCCGCCATCTGATCACCGTGAACAACATCCGGGGTCTTCTCATGAAGACTCTACAAGCACAGAGGCTGCAAAATGCTGAGCAGTTGGTTCAGTTGTACCATCAAGTCCACCCTAATACGGCCTCGGGACGCTTCGTAGCGGGCTCCAGTGAACTGAGCAGTTTCGAAGAACTATGGGCTTTCCTGGAGACGAACAAGCTGTTGGAGGCGGCACTGCCATACTTACCGCAGCCAGAACAGGATGAAGAGAATGAAGAAGAAGGGTTCGAGACACTGGATTTAGAAGTTTATGATTACACAGCGGCGCTAACATAACTGTCAGGTTCGGCTTCTTGTTTGGTCGTTTTGACTACTTAAAGGTCGGTGGGGAAGAGTGAGATGTTGCATGACACACACACAGTCCTTTCACGGCATTTTAGAGCATAGTCACAGCTTCCTGAATGGATTAATCCTTGTTGATGACTTGTAGCAAGCTTCAGAAGGCATCATTGAAACATTGAATCCAAATAATAGCTGTTTTCTGTTTTTGAAAATGATAAACTAAACAAGACTTGAGTTCGGGTTTAGTGTTAACTTTTAGAACACTTTGTCGTGTGCAACGTCCTACTACTTAAAGTGCCAATGAAATGAAAAAATGGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10245	MRP-S22	Mitochondrial 28S ribosomal protein S22	Family	Interproscan
PF10493	Rod_C	Rough deal protein C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019374	Family	Small ribosomal subunit protein mS22	Interproscan
IPR019527	Domain	RZZ complex, subunit KNTC1/ROD, C-terminal	Interproscan
IPR052802	Family	Kinetochore-associated RZZ complex protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15688	KINETOCHORE-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000070	Biological Process	mitotic sister chromatid segregation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005828	Cellular Component	kinetochore microtubule	Interproscan
GO:0007094	Biological Process	mitotic spindle assembly checkpoint signaling	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:1903394	Biological Process	protein localization to kinetochore involved in kinetochore assembly	Interproscan
GO:1990423	Cellular Component	RZZ complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-