Gene detail

Detailed information of Acti_028184-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_028184-T1	METALLOPROTEASE M41 FTSH	ScLC4GM_1461	32015	35214	+

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_028184-T1

ATGAAACTTCTCAGGTTTGAAAAAAAATATATTCTGCCATTGGCCTTGCTTGCGCTGCTGCTCATAATCTGGATCCTCAAAAAAGGAAATGAGGCAGGTCACTCCGATCTCCAGGATCAGCGCATCGTGCAGCCAAAAATAGAGGAAATCCAAGGAGAGATGCATTCAATAAAAATAACCCTGAGCAGCTTTATAGAGCCCGCCAAAAAAATCAAAATATTTGCTGAAAGCGCGGGCAAGATTGCAAATATAGCGGCAAAAGAGGGCGGCAAGATCAGCAAAGGCGACCCAATACTCAATATCGATCCAAAAGCACAGGAGGAGGCCCTGAAGGCAGCGCTCGCTGGCTTGGAGCATGCCCAGCTGGAGCACAGCACAAACAAAAACCTACATGAAAAAGAATATATATCTGACCTAGAAATCATGGCAAGCGAGGCTCGTTTGAAATCTGCAATCAAAAACCTGAGACAGGCAGAGATTGAAATGGATAACACCACTGTTTATGCACCTTGCGACGGGTTGATTGATAAAATATTGGTCAAAGAAGGAGACCTGATACATGCAAATTCAACGCTGATATCCAGCATAATTGGGCAGAGCACATTTTTAGCGGTAGCGCATGCTTCGGCAAAAGAAGTACAGGGCATTAAGCTGGGCCAAAAAGCCGCCATTAAGCTTGCCGATGGCGCCGACACAGAAGGAATAGTGAGCTTTATTGGAGCTATTGCCAACGATGATACCAGGACTTTTTTAGTAGAAATTGAGTCTTCTCTCGCTAACATCAAAAATAATAATATATTAGGCACTGCTGCTCAGGTTACTATTCCGAGCAGCATAAAATTATCTCATCTGATACCTGCCTCCGCCCTATCCTTAAACCAACAAGGCGCAATTGGAATCAAAATAATTAGCGATGAGGATAAAATTTTGTTTTGCCCAGTAGAGATAATTGATGAGGAAAATGCGGTAGAGTCCGGCCAGATATCGAAAGTAACGATCCAGGGCCGGGAAATAAAAGGATTGATGACAGATGGATCGGGCTTCAAGACCAATGCATTGCAGTATGGCAACCTTGTAGACACCTTGCGTGCGCACAAAGTCCAGATAAGTGTAGGCTCGAACGAATCATTATTCGGCATTATAATTAGCATACTAATTTCATGGCTGCCACTCTTGTTGCTGGTGGGCGTATGGATATTTTTCTTAAAGCAAGCCCAGGTTGGCGGCAATAAAGCCCTGGGTTTTGGTAGATCTAAAATTAAAATGTATGCTGAAAGCTCAGTCAAGACAACTTTTAAAGATGTGGCGGGCATAGGCGAAGCAAAGGAAGAACTGGGTGAGGTAGTGGATTTTTTGAAGCATCCCGCGAAGTTTCAGGCGTTAGGAGGCAAAATACCAAAAGGATGCCTATTAATTGGAGCCCCAGGAACAGGCAAAACTTTACTGGCCAAGGCAATTGCAGGGGAAGCAAAAGTTCCTTTTTTTAGTATTTCGGGCTCGGATTTTGTCGAGATGTTTGTGGGGGTTGGTGCAAGCAGAGTGCGGGATATGTTCGAACAGGGCAAAAAACATGCCCCGTGCATAATATTTATCGATGAAATAGATGCAGTGGGCAGACACCGTGGATCTGGAGTTGGCGGGGGAAACGACGAAAGAGAGCAAACGCTGAACCAACTATTAGTTGAGATGGATGGCTTCGAGCCAAACGAAGGGGTCATAATACTCGCTGCAACCAACAGACCAGACGTGCTGGATAGCGCGCTGCTGCGGCCCGGCAGGTTTGACAGAAGAATACATGTGCCCATGCCTGACATAAAGGGCAGAGACGAGATATTGAATGTGCACGCAAAAAATATATCCCTGGCCCCTAATGTTGTTCTGCACAATATAGCCAGGGCTACTCCAGGATTTTCCGGGGCTGATTTGGCCAGCCTGATCAATGAAGCAGCGCTAGTGGCAGCGAGAAGGGACAAAAAAGTGGTGACTATGGAAGAACTGGAGCACGCCAAGGATAAAGTGATGATGGGCGCGGAAAGAAGATCCCTCACCATGAAAGACGAGGAGAGAAAACTGACCGCCTATCACGAAGCGGGGCATGCCCTCATTGCGCTCAATATCAAGGGTTCAGATCCGGTCTATAAAGCCACCATCATCCCGCGTGGGCATGCGCTGGGGCTGGTTATGCGCCTGCCTGAAGATGATAAAGTATCGATTACTAGGCAACAGATCGTAGCTGATATAACGGTTGCTATGGGAGGACGCCTGGCAGAGGAGATGATTTTTGGTGCTGACAAAGTGACAAGTGGAGCATCCTCTGATATCAAGCAAGCCACAGAATTGGCTAAATCAATGGTTATGAAATGGGGCATGAGCGAAAAAATAGGGCCGCTATACTACGGCAGCGACGAACACAGCACGCCCCTGCACAGAGGAGAGGAGCAAAACACGTCAGATGATGTACAAAATCTGATTGACAATGAAATCAAAATAATAGTGATGGCAGGATATAAAAATGCCAGAAAGATGCTAACTGAAAATATAGAAGATCTGCATAAACTGGCTCAGGCTTTGCTGAAATACGAGACTCTCACCGGGGATGAAATGAAACATCTGCTTGCCGGAGAAAAAATTGACAAGGATGAGGACGGTAATATGAAGCCATCAAAAAAATCTTCCTTTGCCGACTCAGAAAAAAACAACAACATGGATATGCCAGAAGAGCCACAGGAGGTTTAG

Transcript

Acti_028184-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF01434	Peptidase_M41	Peptidase family M41	Domain	Interproscan
PF16576	HlyD_D23	Barrel-sandwich domain of CusB or HlyD membrane-fusion	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000642	Domain	Peptidase M41	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR005936	Family	ATP-dependent zinc metalloprotease, FtsH	Interproscan
IPR006143	Family	RND efflux pump, membrane fusion protein	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032317	Domain	RND efflux pump, membrane fusion protein, barrel-sandwich domain	Interproscan
IPR037219	Homologous_superfamily	Peptidase M41-like	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23076	METALLOPROTEASE M41 FTSH	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004176	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0030163	Biological Process	protein catabolic process	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-