Gene detail

Detailed information of Acti_028049-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_028049-T1	LD33695P	ScLC4GM_1370	49785349	49827919	-

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_028049-T1

ATGGAGGAAAGGGTCATCACACATTACGACAGGACTCTACTTCATAATGAAATGCAACTGGAAACCGCAAAGAGGAGAAAAGACAAGGAAAGTGAGGGGCGTGCTTGTCGTAAACTTAGTACCTGTTATTTTGATCTCGGACAGTACCAAAAGGCCAAAAATTATGATGAAATGCACCTGACCATTGCAAAAGAGATAGGGGACAAGGAAAGCGAGGGACAGGCTTATGGCAACCTTGGTAGCTGTTATTACTCTCTCAAAGACTACTACGAAGCTATACGCCATCATGAAATGCACCTGGACATCGCAAAGCAGACAGGAGACGAGGCAGGCGAGAGACGTGCTTATAGTAATCTTAGATGCTGTTGGTCTGTTCTCGGAGAGTACGACAAGGCCAAATATTATTTTGAAATGAAACAAAGCATTGCAAGGCATACTGGAAACCAGGCAGGATCTATTAGCCTTGATTCATTGGATAAGGAAGACGATAATTTGCACATAGAAGTTGACGTTCTTCATGACGAGAAGATGTATGCGGTATCCTCAGAGCCCAAAGCTGGTGCTCAAAAAGCACGATCTGAGAGTGTTTCCAGTGGTCAAGACATCATTGGTGCCTTCATATTGGCTATGAAGGATGGGAATACAAGAACTCGCCCTCCTTCGATCACGTTGACAGGACAAGCAAAGGAGGGGTGCACGAGTCCTCCAAAGTCCCCTAAAGCGTCTAGCAGCCTTGATTCATTGGATAAGGAAGAAGATGATTTGCACATAGAAGTTGACGTTTTTCATGACGAGAAGATGTATGCGCTATCCACAGAGCCCAAAGCCACAGCCACAACTAAAGCTGAAGCTCAAACAACACCACCTGAGATTCTTGCCCGAGGTCAAGACGCCATCAATGCCTATAAATTGGCTCTTGAGGAAGGAAAGACAAAGAATCGTCGTCTTTTGGTCACATTGATTGGACAAGCAAGGACAGGGAAGACGAGCCTTTTAAAGTCCCTTAAAGGCGAAGCTTTCGACCCTCATGAAGACAGCACTTTAGGGATAGCACTACAGCCTTTACATTTAAAGCTTCAAGAGGAATCTTGGAACGTCATAGATGATTCACATGTGGTTTCGTTTGAACAATGTGTGGCAGATAAGATGGCAGAATACCTAAAATCCAAGATTACAGAAATACATTCCGTTCAAAGTAGCAATGACGAAAACGAAAAAGGGAACCCGGTGAAGCAAGATCAACTGCCTACAAAACATCCGAAAACCGAAGGTAGTCAGCACACGCCATTTCAAGAGCCGGGCGCCTCACCACTACCCGAAGTAGTGTTCGCGGATGAGACGAAGATACCCGAAGAAATCTTGGAATTATTGGAAGATCGTCTTAAAAACGAAAACAAAAACGACGAGGAAAAACACATTGTTCTAACTGTACTTGATTTCGCAGGACAGCAAGTTTACTATAACATACATCCCGTGTTCATGTCCTCAACATCCATTTACGTTCTTGTGTACAACCTTGAGAATGACCCTCATGCAAGGGCGGTATCTACCGTGGGATGCGGGGGTAGAGAGTACCCGATTGACGAAGATTGTCCGAAGACGAACATGAACCACTTAGAGTTTTGGCTTTCCTGCGTGGCATCCATCTCTACTGACGGGTCTGGAATGTCAGAATATCAAATAAAAGAAGAAGAAAATAGTGTCAAGTTAAACAAAAAACTACCACCAGTGTTCCTCGTATGCACTCATCTTGACCAAGTTCTCGAAAAAGAGAAAGATCCAGAAAGCGCAACTAGTACAATACTCGAAACACTGACTGACGACAAACGGCCCTTTGGAGAGCATCTTGTTTGGAAAATCTACCCAGTCGACAACACAAAGTCTGGAAAAGAGAAAGAAGAAGATAAGGGCATACAGTGTTTGAGAAAAGATATTCTTCAAGCAGCAGAGAAGCTGCCTCAAGTGGATGAGGATATTCCTGTCTGCTGGTTGCAGTTTGAAGAAGAGATTGGCTTCCTTGGTGAGAACTGGATAGACATAACAAAGGCCAAAGAAATAGCCCAAAAATGCAAGGTTAAAATCCAATCTGATGGATTGAAGACACTCCTGAACTATCTCCATGATTTGAAGGTTGTGATCCACTTTGAAGACACCCTAGAACTTGATAACATGGTGATTATCAAGCCGACATGGCTTCTTGACATGTTTGTGAAAGTGATCACCGTTTTGCCCATTAAAGACTGGGGACCAAGTTACAAAACATTGTGGCAAGACCTCGAGAAATATGGTGTGCTGCACATGGCCTTGGTGAAGCATGTCTGGAAGGATATAGTTAGTGAGAAACAGACAGTCACTGCCCTGCTGTCAATCATGGAGAAGTTCAGTCTTCTGTGCAAGTGGCAAAAGTCAGATGGTTCTGAGGTGTTTCTAGTGCCGTCAATGTTGAAGAGCCCAGCAGTTGATGAGGTTCAAGAATTGTTCCAGAGAATCAGCGATGGGGTACCGACCATTGTAATGCGGTTCACAAATGGTCATCTACCTCTTGGTTTCTTCCCGAGGTTTGTGCTGTTTTTCGTCGAGTGGTGTACAGCAACATGGAAAGATTGCAAGCAACCAAAGCTTTTTAGGAACCTTGCCAAATGTGACGACCTTGGAGAAAACATGGAGTTCTCTGTAGTCGTTGTGTCAGACATGAGCACAATAACCATTGAAGTTGTCAAAGACGAGTCGCCAACAGTGGAAGCTCCTCCCATTGACAAAGAAAGGTTCTCCCACTGGTTTCAATTCTGCATAAGAAAGTTTCCAAAAAGCAGCCTGAGAGATCTGATTGATGACTACAATATGCTCGATGACCTGGCGCGGTGCTTGGATAGAGAATTCAGGGTAATCAAAAACTGGTTGCACTTGGCTAAATTTCTAGGTATCCCGACTAATGTACTTGAGGAATGCAGTATGTACAGGGAACACAGCCCAACCGAAAGTTTGTTTGATTTCTTACAAGCCCGCGAGCCAGACCTGACCATGAAAATGCTTAGAATCGCTTTGAGGAACATCTGGCGATATGATGTTTGTGAGGGTGAAATCGACAACTTCAGAGATGAAGATAAAGTTGCTGCGGTCATCACGTCATCATGTGATGTACTTGACAACATAGCTCTGAAACTGGATTCAGCGGACTGCCGACCTGTCAAGAACTGGAAAAACCTTGCACATGAGTTGGGCGTTTCCCGTGCGCAGTGTACTCGATTTGAGATGTACCACTCTTTGAACCCAACGGTAGAGCTTTTCCGCTACCTGTACGCAACACAGAAAGACCTCACTATGGAAGAAATCACAGACAAATTTAGAGAAATGAAAAGAAACGATGTTCTTCAGAGGTTGGAAGGACAACCATTTGAAGGTAAGGATCTGGCCAGCGAGGTAATCCAGCTACATTCAGATCTTCTTCTCGACATTGCTCAGCAATTGAACAAAGACATTGCTGGTCTTGGAGGATGGCGAAAACTTGGTCGTCTCCTTGAGGTACCTGCCGAAATCTTGGATGCCTGTGATCCTCCAAGCGGGCTAAAGATTCATAGTCCCACCAAAAGAATGCTCGAATGGCTGGCAGCAGCTAACCCTTGCTTTACAGTTAAAGATCTTATCATCGCACTGGAGAAACTTCAACGCCAAGATGCAATAGCAATTATACGCGCGCACGAACATCGATCAGGAAGACGTGGCTCAAAATCTGGAAGTAATTCACAAGGAAAGTAA

Transcript

Acti_028049-T1

ATTTTCGCACCCTTCAGTTATTCTCGGTCCAATCCGAATACTTGAGCTTTCTGGGTATCTGAAAGATGGTTGTCGTGAACTTTTAAGACGTACATCTTTCCATGCAATGTCGACAAATTTAAACAAATGGATTGAGATGTTTGCTGCACGATCAAGCTTGTATTAAAAGGCCAGTCTTCGTGAGCTAGATACACGTCCAAATTACCAAACCAACAGGGAGATGCTTAGCGGAAGAGGTTCTTGGCATGAATCTTGCTAAGTGACTCTGATAACATACAATGAACATCCAAGTATGGTGAACTCTCGTTGGCTAACTTCATCACCTGACTGAACGAGGACAATTTAGACACTATAGTTATGGAGGAAAGGGTCATCACACATTACGACAGGACTCTACTTCATAATGAAATGCAACTGGAAACCGCAAAGAGGAGAAAAGACAAGGAAAGTGAGGGGCGTGCTTGTCGTAAACTTAGTACCTGTTATTTTGATCTCGGACAGTACCAAAAGGCCAAAAATTATGATGAAATGCACCTGACCATTGCAAAAGAGATAGGGGACAAGGAAAGCGAGGGACAGGCTTATGGCAACCTTGGTAGCTGTTATTACTCTCTCAAAGACTACTACGAAGCTATACGCCATCATGAAATGCACCTGGACATCGCAAAGCAGACAGGAGACGAGGCAGGCGAGAGACGTGCTTATAGTAATCTTAGATGCTGTTGGTCTGTTCTCGGAGAGTACGACAAGGCCAAATATTATTTTGAAATGAAACAAAGCATTGCAAGGCATACTGGAAACCAGGCAGGATCTATTAGCCTTGATTCATTGGATAAGGAAGACGATAATTTGCACATAGAAGTTGACGTTCTTCATGACGAGAAGATGTATGCGGTATCCTCAGAGCCCAAAGCTGGTGCTCAAAAAGCACGATCTGAGAGTGTTTCCAGTGGTCAAGACATCATTGGTGCCTTCATATTGGCTATGAAGGATGGGAATACAAGAACTCGCCCTCCTTCGATCACGTTGACAGGACAAGCAAAGGAGGGGTGCACGAGTCCTCCAAAGTCCCCTAAAGCGTCTAGCAGCCTTGATTCATTGGATAAGGAAGAAGATGATTTGCACATAGAAGTTGACGTTTTTCATGACGAGAAGATGTATGCGCTATCCACAGAGCCCAAAGCCACAGCCACAACTAAAGCTGAAGCTCAAACAACACCACCTGAGATTCTTGCCCGAGGTCAAGACGCCATCAATGCCTATAAATTGGCTCTTGAGGAAGGAAAGACAAAGAATCGTCGTCTTTTGGTCACATTGATTGGACAAGCAAGGACAGGGAAGACGAGCCTTTTAAAGTCCCTTAAAGGCGAAGCTTTCGACCCTCATGAAGACAGCACTTTAGGGATAGCACTACAGCCTTTACATTTAAAGCTTCAAGAGGAATCTTGGAACGTCATAGATGATTCACATGTGGTTTCGTTTGAACAATGTGTGGCAGATAAGATGGCAGAATACCTAAAATCCAAGATTACAGAAATACATTCCGTTCAAAGTAGCAATGACGAAAACGAAAAAGGGAACCCGGTGAAGCAAGATCAACTGCCTACAAAACATCCGAAAACCGAAGGTAGTCAGCACACGCCATTTCAAGAGCCGGGCGCCTCACCACTACCCGAAGTAGTGTTCGCGGATGAGACGAAGATACCCGAAGAAATCTTGGAATTATTGGAAGATCGTCTTAAAAACGAAAACAAAAACGACGAGGAAAAACACATTGTTCTAACTGTACTTGATTTCGCAGGACAGCAAGTTTACTATAACATACATCCCGTGTTCATGTCCTCAACATCCATTTACGTTCTTGTGTACAACCTTGAGAATGACCCTCATGCAAGGGCGGTATCTACCGTGGGATGCGGGGGTAGAGAGTACCCGATTGACGAAGATTGTCCGAAGACGAACATGAACCACTTAGAGTTTTGGCTTTCCTGCGTGGCATCCATCTCTACTGACGGGTCTGGAATGTCAGAATATCAAATAAAAGAAGAAGAAAATAGTGTCAAGTTAAACAAAAAACTACCACCAGTGTTCCTCGTATGCACTCATCTTGACCAAGTTCTCGAAAAAGAGAAAGATCCAGAAAGCGCAACTAGTACAATACTCGAAACACTGACTGACGACAAACGGCCCTTTGGAGAGCATCTTGTTTGGAAAATCTACCCAGTCGACAACACAAAGTCTGGAAAAGAGAAAGAAGAAGATAAGGGCATACAGTGTTTGAGAAAAGATATTCTTCAAGCAGCAGAGAAGCTGCCTCAAGTGGATGAGGATATTCCTGTCTGCTGGTTGCAGTTTGAAGAAGAGATTGGCTTCCTTGGTGAGAACTGGATAGACATAACAAAGGCCAAAGAAATAGCCCAAAAATGCAAGGTTAAAATCCAATCTGATGGATTGAAGACACTCCTGAACTATCTCCATGATTTGAAGGTTGTGATCCACTTTGAAGACACCCTAGAACTTGATAACATGGTGATTATCAAGCCGACATGGCTTCTTGACATGTTTGTGAAAGTGATCACCGTTTTGCCCATTAAAGACTGGGGACCAAGTTACAAAACATTGTGGCAAGACCTCGAGAAATATGGTGTGCTGCACATGGCCTTGGTGAAGCATGTCTGGAAGGATATAGTTAGTGAGAAACAGACAGTCACTGCCCTGCTGTCAATCATGGAGAAGTTCAGTCTTCTGTGCAAGTGGCAAAAGTCAGATGGTTCTGAGGTGTTTCTAGTGCCGTCAATGTTGAAGAGCCCAGCAGTTGATGAGGTTCAAGAATTGTTCCAGAGAATCAGCGATGGGGTACCGACCATTGTAATGCGGTTCACAAATGGTCATCTACCTCTTGGTTTCTTCCCGAGGTTTGTGCTGTTTTTCGTCGAGTGGTGTACAGCAACATGGAAAGATTGCAAGCAACCAAAGCTTTTTAGGAACCTTGCCAAATGTGACGACCTTGGAGAAAACATGGAGTTCTCTGTAGTCGTTGTGTCAGACATGAGCACAATAACCATTGAAGTTGTCAAAGACGAGTCGCCAACAGTGGAAGCTCCTCCCATTGACAAAGAAAGGTTCTCCCACTGGTTTCAATTCTGCATAAGAAAGTTTCCAAAAAGCAGCCTGAGAGATCTGATTGATGACTACAATATGCTCGATGACCTGGCGCGGTGCTTGGATAGAGAATTCAGGGTAATCAAAAACTGGTTGCACTTGGCTAAATTTCTAGGTATCCCGACTAATGTACTTGAGGAATGCAGTATGTACAGGGAACACAGCCCAACCGAAAGTTTGTTTGATTTCTTACAAGCCCGCGAGCCAGACCTGACCATGAAAATGCTTAGAATCGCTTTGAGGAACATCTGGCGATATGATGTTTGTGAGGGTGAAATCGACAACTTCAGAGATGAAGATAAAGTTGCTGCGGTCATCACGTCATCATGTGATGTACTTGACAACATAGCTCTGAAACTGGATTCAGCGGACTGCCGACCTGTCAAGAACTGGAAAAACCTTGCACATGAGTTGGGCGTTTCCCGTGCGCAGTGTACTCGATTTGAGATGTACCACTCTTTGAACCCAACGGTAGAGCTTTTCCGCTACCTGTACGCAACACAGAAAGACCTCACTATGGAAGAAATCACAGACAAATTTAGAGAAATGAAAAGAAACGATGTTCTTCAGAGGTTGGAAGGACAACCATTTGAAGGTAAGGATCTGGCCAGCGAGGTAATCCAGCTACATTCAGATCTTCTTCTCGACATTGCTCAGCAATTGAACAAAGACATTGCTGGTCTTGGAGGATGGCGAAAACTTGGTCGTCTCCTTGAGGTACCTGCCGAAATCTTGGATGCCTGTGATCCTCCAAGCGGGCTAAAGATTCATAGTCCCACCAAAAGAATGCTCGAATGGCTGGCAGCAGCTAACCCTTGCTTTACAGTTAAAGATCTTATCATCGCACTGGAGAAACTTCAACGCCAAGATGCAATAGCAATTATACGCGCGCACGAACATCGATCAGGAAGACGTGGCTCAAAATCTGGAAGTAATTCACAAGGAAAGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR052386	Family	G-protein-signaling modulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954	LD33695P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-