Gene detail

Detailed information of Acti_027483-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_027483-T1	RNA BINDING PROTEIN	ScLC4GM_1370	26467230	26469510	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_027483-T1

ATGCCTTATCCCCACCCACCCACGCACCTTTGTATTGAGAGAAAAGATTACAAGCGTGACAACATCATGCATCATTCCTTCCCAAAAGCATTGCTAAACATGGCTATCGCTATGCCCGATCAGCAATCAGTTGAACAAATTACTGTTCCTGCCGATGAGCTAACATGTCCAATCTGCTTTGAAGACTTCGAAGAACCAAAATCTCTCCCTAAATGTGCACACAATATTTGCAAGGCCTGTCTACAGAAAATGTCGGCTAGAAACTCGATAAATTCGATCAGCGAGGAGATCGAGTGTCCAATATGTCGCCGGAGGTCGAGTGTTCCACCGGGGGGAATCGAGGAATTTCCGACTAATACACTTATCGTTAGGCTTCTAGAACACAGTGTTAGGAGAAACGAAAAGCTGGAGATAAAACAGGCGCTGGAGGACTATAAGAAAAAGCTTAAAGGAACAGAGAAGCTCATACAAGACATTGATAACCGGTGTGAAGTATTCGAAAGGTCAAAACAACAAGAACAAGATTTGAAGAATGAAATTGCTGAGTATGCCAAAGAAGTTGGAGAAATTATATTCGAGTTAGTCAAACAACATGAGAGAAAACTATGTGATCAAGTCGAAGAGTTCTTCGATCAGAATTTTGGAGACTCTTGTTTAGAAAAGCTGAAAGAGCACAAAGCGAAACTCAAAAATGTTCTGGAGCACTCGGCCACCTACATTGAAAATGTCGAATACACATTAAATCGAGACCATTCAGACGAATTTGTGTCGATGAAAGGACTTATAAGTTATCAGTTGGATGAAATAACCCAGGAGTCTAATGATAGCTTTATTATCGGGGAGCTTGGAAAGATGGATGGTATTAATTTGCAGCTACAGAAAGCAAATCCGAGATTGATTTTCCAAAATGAGAACCTTCTGGGTCAAGTTACTCATAAATCAATTATTAATACAGCACAAACTGTTAGTTGCAACGAAGTCATGCCTGACTCCGTGACACAGGGTGTGAACCTGTACATCAAGAATTTTGAGGATACAATTGATGATGCTCGCCTTAGGGAAGAATTTGCTCCTTATGGTACCATATCTGGTGCTAAAGTCATGAGAGATGAAAAAGGAAACTCAAAAGGTTTTGGATTTGTGTGCTTCTATTCACAAAAAGAAGCCAGTAAGGCAATTACTGAGATGAATGGTAAGATCGTAATATCAAAACCATTGTATGTGGCTCTGGCTCAACCTAGGGAGGAACGTAAAGCTCAGCTGGCTGCTCAACACATGCGTAAACTCGCTGGCCAACATATGCACCAGGCTGCAGGCCAACAAGTTGCTGGACGCCACCGATTCATCCCCCCACGGATGTTGCATGTCCATCCTCGCTGGCCCATGCAACAACAACAACAGCAGCAGCAGCATCCCACAGGATTGCAAAATATGGAGGCTCTACAGGTACCAGAATGTGCCAGATCTGGTATCGCTTCAGCTGGTCCTGGTGGCATGGCATCAGTTCCTCAGCCTCCAGCCCCAACTGAGGCTGGCGTCCAGCGAGAACCTGATTGTTGTTTACCAGCTGTAAACCCCTTAGACCAGTGAGAACTTGTCGATTACCTTGAAACTTCTTTTTGAAATGATTGCTGCTGTCATTTTGGTTAGGGTTGGGTTTTATTTGGGTTAGGGCTAGAATATCAACATTCTCAATAATGATACCCATAATCCTACTCGCAATGATATTTTTTTAATATTATGTCCACTAATAGTTTATTCCCTCTGATATCTAAACCTACTAGAACTACTACTTATCAGCCACTCTTATTGATAACATTTTTACTAATAATTTGTTCTATACTGATATATCTGATCACCTTCCTATATTTCAAATAACAAATCTTAAGCTCTCTGCTATATCTCATCCAAGCCAAATTTATACTCGTATTGTTTCTACAACTATTTACAATACACCTTCTCCTAATGACTCATATGACTTATTTCTAAATTTTTTGCACCCTATTTATAACTCTTGTTTGCCATTAAAAACTATTAAACACCGCATTAAAAATCATTCTAAACCCTGGTTCACACCTGGCTTAAATGAATTCGAGCAGAAGGAAACATTCTCTATACAAGATTGCTTTAACTGTTGAGATATTTAAAAAGTATAAGACATTTCGTAATAAATACAACTCCTTAATAAAGATAGCAAGGAAAAAATATTTCCATTGACAATTTAAGTGCCAATGAAATGAAAAAATGGATCCCGTTTTTATTTTATTTTATTAAATTCTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008143	Molecular Function	poly(A) binding	Interproscan
GO:0008266	Molecular Function	poly(U) RNA binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-