Detailed information of Acti_023932-T1 in Actinernus sp. WN-2022 Gene info
Gene IDAnnotationScaffoldStartEndStrand
Acti_023932-T1U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEINScLC4GM_121256291645646129+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF04158Sof1Sof1-like domain FamilyInterproscan
PF08662eIF2AEukaryotic translation initiation factor eIF2ARepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR007287DomainSof1-like proteinInterproscan
IPR013979DomainTranslation initiation factor, beta propellor-like domainInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR051733FamilyWD repeat-containing DCAF13/WDSOF1Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR22851U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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TOP