Gene detail

Detailed information of Acti_022819-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_022819-T1	SYNDROMES PUTATIVE CHAPERONIN-RELATED	ScLC4GM_938	76863077	76876791	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Acti_022819-T1

TCGGTGGTATACTAATAGTAATAAGAAAATCTTTAAAAGGAGGCGTGGGTTATTCGTAATGTTAACATATGGAAAAATGTGGATAGCTGATTGAGTAAATGCTGATCAAAATTCTGCAGATCAAAAGACATTTACCAGATTCAATGCCATAATTCATAAATATTGACAAGACTCAAGAGTCAAGACTAGACAAGACTCAAGAGTCAAGACTACAAGTACAAAGTATAAATGAGTAAGAGTGCGAGGAGAGGGCTATTAGCTGCCAATAGATCAGAGGAACGCCAGATTCACAGCCATCCCTTGACAGATATCAAGATTGTTGCTGCCCTGTCGTCATTTAGGAGAATTGTTCAATCATGTTATGGTCCAACTGGAAGGCTGAAGTTCCTACAAACAGTTTCAGGTGGTCATTTGACGGTCACATCAACATGTAGTAGAATCCTGCACCATCTGGTGTCTGTCTGTCACCCTATACTCAGACTGATCATCATGGCTGTCAGGGGACACTTGGATGTTTACAGTGATGGTGGGCTGTCTACATCCCTGCTCACAATCAGATTGATAGAATCATCTTTAGGACTCAGGATTCCTAGGCAGGTGGTGATAGAAGTGAACAGCCATGCCGTGGATGTCCTGACCAGTTACTTGAAGTCAGGAGGGTGTCCATGGAAGATGAAGATTGATGTTGGAGATGTGAAGAGTATGATATGCCTGCTGAGAAGTGTTGTGGGCACCAAACCAGGCTGCTGTTTGTCAGATAGTAATCAAGAGTATATTTGCACTATTTTGCTAAAGGCTTTTCTCCAGTCCTTACCTACTTCAAAACCTAATGGACACCCACTAAGATGGACACCTACACCAGTTCAAATTATTAGCTGCGAAGGAAGCCCAGTTCTTGACACTAGGGTTATTGAAGGAGTTATTCTTGAAGCTGCAGACCTCCCAACATTCTTGAAAGAGAAAGAGTGTCGAACTGATGAGTCCCTTAAGGTGGCACTTTACAATGTTTCCATGGCAGCAGATACTGAGGAGTGGTTTGACAGTGTGACCACTGTTGCTAGTGGTGATATAGCTGATGAAGGATTCACAGGGGGAGTTGTGCAACAGATGACGAGTGTGGCCATGACATTGGTGTTGGCAGGAGTGGGCCTGGTGGCTTGTCAGAAGTGTATTCACCCTGCACTCAGGAAATTACTGAAAAATAAGGGTGTGTATGTGATTGACCGCCTGTCTGTACTGCACATTGGAGCAGTTGAGAGACTAACTGGAGCTACAGTTCTTAGTACATTCACTCTGGACATCCCAGACCATTTTTTTGGCCAGTTACAGAGTATTGAACACACCATTATAGGGAACAAAAGCTATCTGCACCTTGTGCCAAGTTCCATTATGACAACATATCAGTCAGTATCTACAGTAATCCTGTGCTCGCCAAATGAGACAACACTTGAGGAACTGAAGAGCGTTTGCCAGTCAGCTATTAGTGTCCTGCATGGGACACTTGCAAGCCCCTTTGTAGTGCCAGGTGGTGGGTGTCTGGACACACACTTAGCTTGGTTTTTGAGGTGTCATGCTCAGCAATGTAGTGATGAGTGTTTGGAAAAGCTTGGATGTACAAAGGCCCAGTTTTATATGGTGATGAACAATGTTGCCAGCTGTCTTGAGATGCTTGCCACTAGTTTAGAGCATGATCAGGGTAGTCATGTGACAGATGCTGCTAATCGCCACCACTGGAGCTTACCCCCAGCCACCGATCCCTCCCATGCTACTACCTCACATTGCATGTGCCACCTTGTAACGAAGGACAAGGAAGAACTTGACTGGTATGAATTGGGAATTCATTCTGAAGTTCAGTTGTTGTCTATTGATTGTATGTCAAATTGTAAAATTATGGATACTCAGGAAAGAAAGTTTGATAATGCTATAATAGATTCTTTTGCAGCGAGACTTAACTCACTGAAAATGTCATTTGAGACTGCAAATGTGATCTTAAGAGTCAACTGTCTTGTTACTGATGGATGAGAATGGACATTATATGACATGTAAATAATTATAAAATAATTTAAATTAAATTTAAAATATGTTATAAAGAGAAAATTGATAACAATAAACCCAGGTTATTGCTACGAACATTAGGGACTGGCAGTTTATTATCTGTGAGGGGGTGGCAGTTTTGGCTTGGTTGCAAAAGTTTTGGGTCTCGACCCCCCATGCAAACCAACATTTCGGAATTGGACACCCCACGCTGATGTGCAACATATGAAAATGAGCCCCACACCCCTCATGACATGTCCCTAGATGAAATTAGGAGTTTTTGGTTGCTCCAGATGGCTCAGCCAATGAATTCGGTCTTTTGACAGCTGGGTGGAAAATTTTGACAAGGTTTTAATTAAGACACTGTCATGATATGGTAGACTGCTTTTAGTTGACGACATGGCTTCTTTTCAACTAATGTTGTAAGTATGGAAACCAAGAATTGTTTTGAAGATTGCATTTTAATAGTAATAGATTTGTGCTCCTGCTAATTTAGTTAGGCAAGGAATGGAACACATAATTTGTTTTATGTTCAGGGAGTGGATTCGTATAGACATTTGTAGGCAAAGACATGTCACTTTTTTTTTCTGCCATTATCACAGTTCGGTGGATTTCTTAGTGTCTTTTAAAATGCATATGAAGATTTGTTTACTTGAGACACGTTAAATGAGACCAGAATGCATAGGATACCTTAAGAAACAAAGACAAAGGAAATCAACGAAAAATGACCTTGCAGTATAACTTCAATATTTTCAACAACAAAAAAGTGAATTTCAAAAATGACCCCCCTACAATTTGGATGGTCCCCCTCACAGATAATAAACTACCAGTCCCTTACATCGATTTTCAGTCACACACACCCTTTAAAAATGTTGTCTCAATGAAGAAGTAATGTTTTGGTGGACCATGTAAATCATTAGTTTAACTTTGTTTATTTCATTGGTCAACCTGTCCCACTGTGATAAAAGTATTTATTGACTGTATAGACAGATTATTTTTGCCTTGCTTCTAGAAAATAAGCAACAGAAACCGATTTTGAATCCAGATTTTAGTGTAGATCTTGGAAATGTCAAAGAACAACCACCAGTGATACAAATACAACTCAATGGTGCCTTTTTCAAGCCTTCAAAAAACTTGTTTTCATACCACAGATGTTTTCATATTCCAACCCACCAGAACACAACTTTTTTGTGAAGACAAAACTTCCACATCATGTGTGACTGAGAATCGCTGTAAATAAATAAAATGCAATATATCCAGCCAGTGAAAATGAAAGAACCTTTTGGGAAATGGGTGTTAGATGCTATTATAATGAACAATGGTCATTTTCTTTTCTAATTTGAAAGCACCAAACTTTGCAAGGTTTCTGAATGATGTGTTGCCATATACATGTAGATACATGGTTAACAATGTTTCTGGAAATCTTGAGTATGTTAATCTGAAAGCCAAGTGTTGTGATTGGTGGTCAGCAATTTATTGGAAAACTATTTCAGTGCTGCTAATTGAAAAGTCTGACTGGGTTGTCATAACAACTAACTACCCAACAAAGGTGGAATTCTTTTATTTTACTTTGGACATTTTAATTTTGTTTGCTTGAGTGTTTATCAGGATTACACAAGGAAATTTTACTAAAATTAATTGTCTGATGAAAATGGTTGTGAGTCTGCATCTAATGAATTCCTATTTATAACAAGTGTAAAAAATAAAGACAATTATCATATACAATGTAATAAAAAAAAAAATATTTGCAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002423	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR017998	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR027409	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR027410	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR027413	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR028790	Family	Molecular chaperone MKKS	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46787	SYNDROMES PUTATIVE CHAPERONIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0032502	Biological Process	developmental process	Interproscan
GO:0046907	Biological Process	intracellular transport	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0051131	Biological Process	chaperone-mediated protein complex assembly	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:1902636	Cellular Component	kinociliary basal body	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-