Gene detail

Detailed information of Acti_022142-T1 in Actinernus sp. WN-2022 Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Acti_022142-T1	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	ScLC4GM_938	56946606	56957234	-

Gene Structure

More details in Jbrowse Sequence

CDS

Acti_022142-T1

ATGGCTGGACCAGGATGCTTTGTCGACATCAACAGAGCGACTCCCCAAGAGTTAAAACACCTCAATGGCATTGGCATAGCCAAAGCAGAGTCAATAATTGAGTTCAGGGAAGCCTTGGGTGGCTTCTCCTGCATTGATGACTTGCAGCAAGTTCCTGGGATTGGTCCTCATGTTGTTGCATCAAATAAAAGTGAACTTCTTTGCTCTGCTGCCAAGCAGCAGTCAACGAGGGTGACAAGATCATGTACTAGCAGGAGAAAGAACAGAAGGGAATTTAAGCCTCGACGACAACTCTTCAGAAAGATGACGCAAATCATACCTACATGTACCAAAGAAAATAAAAAGGAATCACGAAAACAGAAGCTTGCTGGCGAGCTTGAATCAACTGATGGAACCCAAAGTCCACCAAAGAAATTATGTACAAATAAACAAAGTAGAATGGTGAGGATTCTTCCTCAAAAGAGCTATGGTAGAATAAAGACAGATACTACAGCTGCATCAGCCGTAGAACCACGGTGTCGGCGAACATCATTTTGTAGTCAGCCACCTGGATTGAAGGGCTGGCTGCAGACGTTTCAGCATTGGGGTGCTGAGGAAAAGAAATATGCTTTGGAAGAGATAATTGATACATGTGAGCCTTCCCTAGTGAGGCATATGATGGGAACTATTGAACCACGGTTCCAGCGGGACTTCATTTCCTTACTTCCAAGGGAGTTAGCACTTTATGTGTTGTCATTCCTGGAACCAAAGGACCTTTTACATGCTGCACAAACATGCAAATGCTGGCAGGTTCTCTGTGAAGATAATCTACTTTGGAAACAGAAGTGCAAGGAAGCTGGAATAAATGATGAACCCACTGGTGTTTCAAAGTCGCCAAGACGCCGCAGTCACCAGCATCAGCACATCCCCCAGCAGCCTTCTGCCAAGCAAATACCCAGTCCTTACAAAAAGATGTTTATGGTCAAGCAGAGAATTTACTGGAACTGGAAGTGTGGCCCTCTGCAGCCATCAAAAATCCTCAAGGGTCATGATGACCATGTTATTACATGCCTGCAGTTTGCAGGCAGTAGGATAGTGAGTGGCTCTGACGATGGCACCCTTAAGGTCTGGTCTGCACTGACAGGGAAATGTTTACGCACACTTGTTGGCCATACAGGGGGTGTGTGGTCATCACAACTGTGTGGTCACATAATTGTTAGTGGGTCTACAGATCGGACTCTGAAGGTCTGGAATGCAGAAACTGGCTACTGTATTCATACCTTGTATGGACATACATCAACAGTGCGCTGTATGGACATGCACGAGAATGTTGTTGTGAGTGGGTCAAGGGATGGGACATTAAGAGTTTGGGATACCACTACTGGAAACTGTCTGCATGTGCTTGTGGGCCACTTGGCTGCTGTACGATGTGTTAAATATGATGGACATTGGGTAGTAAGTGGAGCTTATGACTTTCTTGTGAAAGTCTGGGATCCTGAGACTGAGCAGTGCATCCACACATTACAAGGCCACACCAACAGAGTTTACTCACTACAGTTTGACGGCACCTACATCGTAAGTGGTTCATTAGACACCTCAATACGGGTGTGGCATGCAGAAACAGGACAATGTTTGCACACTCTTGTCGGCCATCAATCTCTCACAAGTGGAATGGAGCTACGGAGCAACACCCTTGTGTCTGGTAATGCCGATTCTACTGTCAAGATCTGGGACATAACAACCGGTCAGTGTCTGCAGACACTAGCAGGACCTAACAAGCATCAGAGTGCAGTAACCTGCCTGCAGTTTAGCAACAAATTTGTCATCACAAGCTCGGATGATGGGACAGTAAAGATCTGGGACTTACAGTCGGGTGAATTCATCAGAGATCTTGTAAAGTTGGATAGTGGAGGAAGTGGCGGAGTGGTATGGCGGGTAAAATGTGATGATAAAAAACTTGTGTGTGCTGTAGGAAGCCGCAATGGTACAGAGGAGACAAAGCTACTGGTCCTGGACTTTGATGCTCATGAGTAG

Transcript

Acti_022142-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12836	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR003583	Domain	Helix-hairpin-helix DNA-binding motif, class 1	Interproscan
IPR004509	Domain	Competence protein ComEA, helix-hairpin-helix domain	Interproscan
IPR010994	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19849	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-